Ziwei Liu

Dr. Ziwei Liu

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 June 2023 in Science Advances
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Journal Article
Open access
SOS. Furkan Ozturk
S. Furkan Ozturk
ZLZiwei Liu
Ziwei Liu
JSJohn D. Sutherland
John D. Sutherland
DSDimitar D. Sasselov
Dimitar D. Sasselov
Homochirality is a signature of life on Earth, yet its origins remain an unsolved puzzle. Achieving homochirality is essential for a high-yielding prebiotic network capable of producing functional polymers like RNA and peptides on a persistent basis. Because of the chiral-induced spin selectivity effect, which established a strong coupling between electron spin and molecular chirality, magnetic surfaces can act as chiral agents and be templates for the enantioselective crystallization of chiral molecules. Here, we studied the spin-selective crystallization of racemic ribo-aminooxazoline (RAO), an RNA precursor, on magnetite (Fe 3 O 4 ) surfaces, achieving an unprecedented enantiomeric excess (ee) of about 60%. Following the initial enrichment, we then obtained homochiral (100% ee) crystals of RAO after a subsequent crystallization. Our results demonstrate a prebiotically plausible way of achieving system-level homochirality from completely racemic starting materials, in a shallow-lake environment on early Earth where sedimentary magnetite deposits are expected to be common.

27 January 2010 in Organic Letters
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Journal Article
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CHChao He
Chao He
GTGe Tian
Ge Tian
ZLZiwei Liu
Ziwei Liu
SFShouhua Feng
Shouhua Feng

26 March 2019 in Journal of the American Chemical Society
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Journal Article
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APAbe D. Pressman
Abe D. Pressman
ZLZiwei Liu
Ziwei Liu
EJEvan Janzen
Evan Janzen
Celia BlancoCelia Blanco
Celia Blanco
UMUlrich F. Müller
Ulrich F. Müller
ICIrene Chen
Irene Chen
Molecular evolution can be conceptualized as a walk over a 'fitness landscape', or the function of fitness (e.g., catalytic activity) over the space of all possible sequences. Understanding evolution requires knowing the structure of the fitness landscape and identifying the viable evolutionary pathways through the landscape. However, the fitness landscape for any catalytic biomolecule is largely unknown. The evolution of catalytic RNA is of special interest because RNA is believed to have been foundational to early life. In particular, an essential activity leading to the genetic code would be the reaction of ribozymes with activated amino acids, such as 5(4H)-oxazolones, to form aminoacyl-RNA. Here we combine in vitro selection with a massively parallel kinetic assay to map a fitness landscape for self-aminoacylating RNA, with nearly complete coverage of sequence space in a central 21-nucleotide region. The method (SCAPE: sequencing to measure catalytic activity paired with in vitro evolution) shows that the landscape contains three major ribozyme families (landscape peaks). An analysis of evolutionary pathways shows that, while local optimization within a ribozyme family would be possible, optimization of activity over the entire landscape would be frustrated by large valleys of low activity. The sequence motifs associated with each peak represent different solutions to the problem of catalysis, so the inability to traverse the landscape globally corresponds to an inability to restructure the ribozyme without losing activity. The frustrated nature of the evolutionary network suggests that chance emergence of a ribozyme motif would be more important than optimization by natural selection.

22 October 2020 in Nature Chemistry
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Journal Article
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ZLZiwei Liu
Ziwei Liu
LWLong-Fei Wu
Long-Fei Wu
JXJianfeng Xu
Jianfeng Xu
CBClaudia Bonfio
Claudia Bonfio
DRDavid A. Russell
David A. Russell
JSJohn D. Sutherland
John D. Sutherland

11 October 2021 in Nature Chemistry
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Journal Article
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ZLZiwei Liu
Ziwei Liu
LWLong-Fei Wu
Long-Fei Wu
CKCorinna L. Kufner
Corinna L. Kufner
DSDimitar D. Sasselov
Dimitar D. Sasselov
WFWoodward W. Fischer
Woodward W. Fischer
JSJohn D. Sutherland
John D. Sutherland

3 March 2019 in Life
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Journal Article
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ZLZiwei Liu
Ziwei Liu
MRMr Rossi
Mr Rossi
RPRobert Pascal
Robert Pascal
The very specific thermodynamic instability and kinetic stability of phosphate esters and anhydrides impart them invaluable properties in living organisms in which highly efficient enzyme catalysts compensate for their low intrinsic reactivity. Considering their role in protein biosynthesis, these properties raise a paradox about early stages: How could these species be selected in the absence of enzymes? This review is aimed at demonstrating that considering mixed anhydrides or other species more reactive than esters and anhydrides can help in solving the paradox. The consequences of this approach for chemical evolution and early stages of life are analysed.