John Abbott

John Abbott

orcid

Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 April 2020 in Proceedings Of The Royal Society B-Biological Sciences
Verified
Journal Article
Open access
MRMaya Rocha-Ortega
Maya Rocha-Ortega
PRPilar Rodríguez
Pilar Rodríguez
JBJason Bried
Jason Bried
JAJohn Abbott
John Abbott
Alex Córdoba-AguilarAlex Córdoba-Aguilar
Alex Córdoba-Aguilar
Despite claims of an insect decline worldwide, our understanding of extinction risk in insects is incomplete. Using bionomic data of all odonate (603 dragonflies and damselflies) North American species, we assessed (i) regional extinction risk and whether this is related to local extirpation; (ii) whether these two patterns are similar altitudinally and latitudinally; and (iii) the areas of conservation concern. We used geographic range size as a predictor of regional extinction risk and body size, thermal limits and habitat association as predictors of local extirpation. We found that (i) greater regional extinction risk is related to narrow thermal limits, lotic habitat use and large body size (this in damselflies but not dragonflies); (ii) southern species are more climate tolerant but with more limited geographic range size than northern species; and (iii) two priority areas for odonate conservation are the cold temperate to sub-boreal northeastern USA and the transversal neo-volcanic system. Our approach can be used to estimate insect extinction risk as it compensates for the lack of abundance data.

21 April 2013 in Biological Invasions
Verified
Journal Article
Closed access
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ELEdward G. LeBrun
Edward G. LeBrun
JAJohn Abbott
John Abbott
LGLawrence E. Gilbert
Lawrence E. Gilbert

18 July 2022 in Diversity
Verified
Journal Article
Open access
PDF file
JAJohn Abbott
John Abbott
CBCornelio A. Bota-Sierra
Cornelio A. Bota-Sierra
RGRobert P Guralnick
Robert P Guralnick
VKVincent Kalkman
Vincent Kalkman
EGEnrique González-Soriano
Enrique González-Soriano
MBMichael W Belitz
Michael W Belitz
Rarely have studies assessed Odonata diversity for the entire Nearctic realm by including Canada, the United States, and Mexico. For the first time, we explored Odonata diversity in this region according to a definition of natural community assemblages and generated species distribution models (SDMs). Species occurrence data were assembled by reviewing databases of specimens held by significant Odonata repositories and through an extensive search of literature references. Species were categorized as forest-dependent or non-forest-dependent, as lentic or lotic-dependent, and according to conservation status. Predicted distributions were stacked for all species across their entire ranges, including areas outside of the Nearctic. Species richness and corrected weighted endemism (CWE) were then calculated for each grid cell. We found a pattern of greater species richness in the eastern portion of the Nearctic, which can be explained by the higher aquatic habitat diversity at micro and macroscales east of the Rocky Mountains, promoting niche partitioning and specialization. In the Nearctic region, the southeastern US has the highest number of endemic species of dragonflies and damselflies; this degree of endemism is likely due to glacial refuges providing a foundation for the evolution of a rich and unique biota.

31 May 2024 in PLOS ONE
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Journal Article
Open access
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CCCarla Cicero
Carla Cicero
MKMichelle S. Koo
Michelle S. Koo
EBEmily Braker
Emily Braker
JAJohn Abbott
John Abbott
DBDavid Bloom
David Bloom
EWElizabeth Wommack
Elizabeth Wommack
More than tools for managing physical and digital objects, museum collection management systems (CMS) serve as platforms for structuring, integrating, and making accessible the rich data embodied by natural history collections. Here we describe Arctos, a scalable community solution for managing and publishing global biological, geological, and cultural collections data for research and education. Specific goals are to: (1) Describe the core features and implementation of Arctos for a broad audience with respect to the biodiversity informatics principles that enable high quality research; (2) Highlight the unique aspects of Arctos; (3) Illustrate Arctos as a model for supporting and enhancing the Digital Extended Specimen concept; and (4) Emphasize the role of the Arctos community for improving data discovery and enabling cross-disciplinary, integrative studies within a sustainable governance model. In addition to detailing Arctos as both a community of museum professionals and a collection database platform, we discuss how Arctos achieves its richly annotated data by creating a web of knowledge with deep connections between catalog records and derived or associated data. We also highlight the value of Arctos as an educational resource. Finally, we present the financial model of fiscal sponsorship by a nonprofit organization, implemented in 2022, to ensure the long-term success and sustainability of Arctos.

28 June 2017 in Ecology and Evolution
Verified
Journal Article
Open access
PDF file
SCSteven D. Collins
Steven D. Collins
JAJohn Abbott
John Abbott
NMNancy Mcintyre
Nancy Mcintyre
Citizen‐science databases have been used to develop species distribution models (SDMs), although many taxa may be only georeferenced to county. It is tacitly assumed that SDMs built from county‐scale data should be less precise than those built with more accurate localities, but the extent of the bias is currently unknown. Our aims in this study were to illustrate the effects of using county‐scale data on the spatial extent and accuracy of SDMs relative to true locality data and to compare potential compensatory methods (including increased sample size and using overall county environmental averages rather than point locality environmental data). To do so, we developed SDMs in maxent with PRISM‐derived BIOCLIM parameters for 283 and 230 species of odonates (dragonflies and damselflies) and butterflies, respectively, for five subsets from the OdonataCentral and Butterflies and Moths of North America citizen‐science databases: (1) a true locality dataset, (2) a corresponding sister dataset of county‐centroid coordinates, (3) a dataset where the average environmental conditions within each county were assigned to each record, (4) a 50/50% mix of true localities and county‐centroid coordinates, and (5) a 50/50% mix of true localities and records assigned the average environmental conditions within each county. These mixtures allowed us to quantify the degree of bias from county‐scale data. Models developed with county centroids overpredicted the extent of suitable habitat by 15% on average compared to true locality models, although larger sample sizes (>100 locality records) reduced this disparity. Assigning county‐averaged environmental conditions did not offer consistent improvement, however. Because county‐level data are of limited value for developing SDMs except for species that are widespread and well collected or that inhabit regions where small, climatically uniform counties predominate, three means of encouraging more accurate georeferencing in citizen‐science databases are provided.

11 November 2022 in Diversity
Verified
Journal Article
Open access
PDF file
VKVincent Kalkman
Vincent Kalkman
JBJean-Pierre BOUDOT
Jean-Pierre BOUDOT
RFRyo Futahashi
Ryo Futahashi
JAJohn Abbott
John Abbott
CBCornelio A. Bota-Sierra
Cornelio A. Bota-Sierra
MBMichael W Belitz
Michael W Belitz
More than 1.2 million distribution records were used to create species distribution models for 402 Palaearctic species of dragonflies and damselflies. On the basis of these diversity maps of total, lentic and lotic diversity for the whole of the Palaearctic (excluding China and the Himalayan region) are presented. These maps show a clear pattern of decreasing diversity longitudinally, with species numbers dropping in the eastern half of Europe and remaining low throughout a large part of Russia, then increasing again towards Russia’s Far East and Korea. There are clear differences in diversity patterns of lentic and lotic species, with lentic species being dominant in colder and more arid areas. Areas with a high diversity of species assessed as threatened on the IUCN red list are largely restricted to the Mediterranean, Southwest Asia, and Japan, with clear hotspots found in the Levant and the southern half of Japan. The diversity at species, generic, and family level is higher in the south of Japan than in areas at a similar latitude in the western Mediterranean. This is likely to be the result of the more humid climate of Japan resulting in a higher diversity of freshwater habitats and the stronger impact of the glacial periods in the Western Palaearctic in combination with the Sahara, preventing tropical African lineages dispersing northwards.