Polyploidy provides a means of interspecific genome transfer to incorporate preferable traits from progenitor to progeny. However, few studies on miRNA expression profiles of interspecific hybrids of B. napus (AnAnCnCn) and B. rapa (ArAr) have been reported. Here, we apply small RNA sequencing to explore miRNA expression patterns between B. napus, B. rapa and their F1 hybrid. Bioinformatics analysis identified 376, 378, 383 conserved miRNAs and 82, 76, 82 novel miRNAs in B. napus, B. rapa and the F1 hybrid, respectively. Moreover, 213 miRNAs were found to be differentially expressed between B. napus, B. rapa and the F1 hybrid. The present study also shows 211 miRNAs, including 77 upregulated and 134 downregulated miRNAs, to be nonadditively expressed in the F1 hybrid. Furthermore, miRNA synteny analysis revealed high genomic conservation between the genomes of B. napus, B. rapa and their F1 hybrid, with some miRNA loss and gain events in the F1 hybrid. This study not only provides useful resources for exploring global miRNA expression patterns and genome structure but also facilitates genetic research on the roles of miRNAs in genomic interactions of Brassica allopolyploids.
Around 85% of all land plants have symbiotic relationships with arbuscular mycorrhizal (AM) fungi, microscopic soil fungi that build extensive filamentous network in and around the roots. These links strongly influence plant development, water uptake, mineral nutrition, and defense against abiotic stresses. In this context, the use of AMF as a biological instrument to enhance plant drought resistance and phenotypic plasticity, through the formation of mutualistic associations, seems like a novel strategy for sustainable agriculture. This review synthesizes current understanding on the mechanisms through which AMF alleviates drought stress in agriculture. We focus on how AMF help maintain nutrient and water homeostasis by modulating phytohormones and signaling molecules, and by orchestrating associated biochemical and physiological responses. Particular emphasis is placed on aquaporins (AQPs) as key water-and stress-related channels whose expression and activity are modulated by AMF to maintain ion, nutrient, and water balance. AMF-mediated host AQP responses exhibit three unique patterns under stressful conditions: either no changes, downregulation to limit water loss, or upregulation to promote water and nutrient uptake. Nevertheless, little is known about cellular and molecular underpinnings of AMF effect on host AQPs. We also summarize evidence that AMF enhance antioxidant defenses, osmotic adjustment, soil structure, and water retention, thereby jointly improving plant drought tolerance. This review concludes by outlining the potential of AMF to support sustainable agriculture, offering critical research gaps, such as mechanistic studies on fungal AQPs, hormonal crosstalk, and field-scale performance, which propose future directions for deploying AMF in drought-prone agroecosystems.
Purple acid phosphatases (PAPs) play a key role in phosphorus (P) assimilation and redistribution in plants, catalyzing the hydrolysis of phosphate esters to produce inorganic phosphate (Pi). In this study, a total of 77 PAP genes were identified in B. napus. The candidate genes were divided into three groups and ten subgroups based on the phylogenetic analyses and exon-intron organization. Among these 77 BnaPAP proteins, 35 exhibit typical metal-ligating residues characteristic of known PAPs, whereas certain unaltered amino acid residues were absent or displaced in other BnaPAPs. A computational prediction was conducted, revealing that the majority of PAPs contain signal peptide motifs and display a range of N-glycosylation levels, as well as transmembrane helix motifs. An analysis of previously obtained RNA-seq data revealed that 55.84% (43 of 77) of the BnaPAPs responded to Pi deficiency. Moreover, we conducted a preliminary examination of the expression profiles of BnaPAP genes in response to salt stress, and discovered that 42.86% (33 of 77) of these genes were induced under salt stress, either in the shoots or in the roots. Further qRT-PCR and GUS analyses revealed that BnaC9.PAP10 and BnaA7.PAP10, two paralogs of BnaPAP10s, were induced by Pi deficiency. Notably, BnaC9.PAP10 exhibits robust induction, compared to the relatively mild induction observed in BnaA7.PAP10. Our research shows that BnaA7.PAP10 uniquely responds to Pi stress via the W-box, while BnaA7.PAP10 predominantly responds via the P1BS element, and the differences in cis-regulatory elements (CREs) within their promoter regions specifically contribute to their distinct expression levels under Pi stress. Our findings provide valuable insights and establish a foundation for future functional studies of BnaPAPs.
20 February 2024 in International Journal of Applied and Experimental Biology
Drought stress limits crop yield globally and is growing as a result of climate change. Water deficit of soil frequently reduces crop growth and yield regardless of developmental stages and nature of genotypes. There are a variety of mechanisms involved in plants in response to drought stress and they trigger the plant drought tolerance strategies. Plants subjected to drought undergo a sequence of physiological, biochemical, and molecular mechanisms to combat the effects of drought, just like plants exposed to other environmental stressors. Using various methods, researchers are currently attempting to understand the intricate operation of the drought stress response in plants. During particular crucial stages such as seed germination, and formation of seedlings, flowering, and grains, plants are particularly vulnerable to drought stress. Through the activation of tolerance mechanisms, plants successfully mitigate the impacts of drought stress during vegetative development stages. However, drought stress during the generative phase might result in yield losses that are irreversible. The present review highlights the tolerance mechanisms in plants and the functioning of physiological, molecular, and biochemical processes involved in plants' resistance to water deficit as well as how various crops react to drying conditions at various developmental points.