Jun Ye

Dr. Jun Ye

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 July 2015 in Agronomy
Verified
Journal Article
Open access
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SJStephen Joseph
Stephen Joseph
OHOlivier Husson
Olivier Husson
EGEllen Ruth Graber
Ellen Ruth Graber
Lukas Van ZwietenLukas Van Zwieten
Lukas Van Zwieten
STSara Taherymoosavi
Sara Taherymoosavi
SDScott Donne
Scott Donne
Biochars are complex heterogeneous materials that consist of mineral phases, amorphous C, graphitic C, and labile organic molecules, many of which can be either electron donors or acceptors when placed in soil. Biochar is a reductant, but its electrical and electrochemical properties are a function of both the temperature of production and the concentration and composition of the various redox active mineral and organic phases present. When biochars are added to soils, they interact with plant roots and root hairs, micro-organisms, soil organic matter, proteins and the nutrient-rich water to form complex organo-mineral-biochar complexes Redox reactions can play an important role in the development of these complexes, and can also result in significant changes in the original C matrix. This paper reviews the redox processes that take place in soil and how they may be affected by the addition of biochar. It reviews the available literature on the redox properties of different biochars. It also reviews how biochar redox properties have been measured and presents new methods and data for determining redox properties of fresh biochars and for biochar/soil systems.

7 February 2017 in The ISME Journal
Verified
Journal Article
Closed access
JYJun Ye
Jun Ye
SJStephen D Joseph
Stephen D Joseph
MJMukan Ji
Mukan Ji
SNShaun Nielsen
Shaun Nielsen
DMDavid Mitchell
David Mitchell
TTTorsten Thomas
Torsten Thomas
Biochar and mineral-enriched biochar (MEB) have been used as soil amendments to improve soil fertility, sequester carbon and mitigate greenhouse gas emissions. Such beneficial outcomes could be partially mediated by soil bacteria, however little is known about how they directly interact with biochar or MEB. We therefore analyzed the diversity and functions of bacterial communities on the surfaces of one biochar and two different MEBs after a 140-day incubation in soil. The results show that the biochar and the MEBs harbor distinct bacterial communities to the bulk soil. Communities on biochar and MEBs were dominated by a novel Gammaproteobacterium. Genome reconstruction combined with electron microscopy and high-resolution elemental analysis revealed that the bacterium generates energy from the oxidation of iron that is present on the surface. Two other bacteria belonging to the genus Thiobacillus and a novel group within the Oxalbacteraceae were enriched only on the MEBs and they had the genetic capacity for thiosulfate oxidation. All three surface-enriched bacteria also had the capacity to fix carbon dioxide, either in a potentially strictly autotrophic or mixotrophic manner. Our results show the dominance of chemolithotrophic processes on the surface of biochar and MEB that can contribute to carbon sequestration in soil.

8 April 2016 in Frontiers in Microbiology
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Journal Article
Open access
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JYJun Ye
Jun Ye
RZRui Zhang
Rui Zhang
SNShaun Nielsen
Shaun Nielsen
SJStephen D. Joseph
Stephen D. Joseph
DHDanfeng Huang
Danfeng Huang
TTTorsten Thomas
Torsten Thomas
Organic farming avoids the use of synthetic fertilizers and promises food production with minimal environmental impact, however this farming practice does not often result in the same productivity as conventional farming. In recent years, biochar has received increasing attention as an agricultural amendment and by coating it with minerals to form biochar-mineral complex (BMC) carbon retention and nutrient availability can be improved. However, little is known about the potential of BMC in improving organic farming. We therefore investigated here how soil, bacterial and plant properties respond to a combined treatment of BMC and an organic fertilizer, i.e. a compost based on poultry manure. In a pakchoi pot trial, BMC and compost showed synergistic effects on soil properties, and specifically by increasing nitrate content. Soil nitrate has been previously observed to increase leaf size and we correspondingly saw an increase in the surface area of pakchoi leaves under the combined treatment of BMC and chicken manure. The increase in soil nitrate was also correlated with an enrichment of bacterial nitrifiers due to BMC. Additionally, we observed that the bacteria present in the compost treatment had a high turnover, which likely facilitated organic matter degradation and a reduction of potential pathogens derived from the manure. Overall our results demonstrate that a combination of BMC and compost can stimulate microbial process in organic farming that result in better vegetable production and improved soil properties for sustainable farming.

24 July 2011 in World Journal of Microbiology and Biotechnology
Verified
Journal Article
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SWShu Wang
Shu Wang
GPGonzalez Perez Pablo
Gonzalez Perez Pablo
JYJun Ye
Jun Ye
HDHuang Danfeng
Huang Danfeng

1 October 2015 in Pedosphere
Verified
Journal Article
Closed access
SJStephen Joseph
Stephen Joseph
DPDoug Pow
Doug Pow
KDKathy Dawson
Kathy Dawson
DMDavid Mitchell
David Mitchell
ARAditya Rawal
Aditya Rawal
Zakaria M. SolaimanZakaria M. Solaiman
Zakaria M. Solaiman

6 October 2021 in Microbiome
Verified
Journal Article
Open access
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YWYulin Wang
Yulin Wang
JYJun Ye
Jun Ye
FJFeng Ju
Feng Ju
LLLei Liu
Lei Liu
JBJoel A. Boyd
Joel A. Boyd
TZTong Zhang
Tong Zhang
Background: Microbial communities in both natural and applied settings reliably carry out myriads of functions, yet how stable these taxonomically diverse assemblages can be and what causes them to transition between states remains poorly understood. We studied monthly activated sludge (AS) samples collected over 9 years from a full-scale wastewater treatment plant to answer how complex AS communities evolve in the long term and how the community functions change when there is a disturbance in operational parameters.Results: Here, we show that a microbial community in activated sludge (AS) system fluctuated around a stable average for 3 years but was then abruptly pushed into an alternative stable state by a simple transient disturbance (bleaching). While the taxonomic composition rapidly turned into a new state following the disturbance, the metabolic profile of the community and system performance remained remarkably stable. A total of 920 metagenome-assembled genomes (MAGs), representing approximately 70% of the community in the studied AS ecosystem, were recovered from the 97 monthly AS metagenomes. Comparative genomic analysis revealed an increased ability to aggregate in the cohorts of MAGs with correlated dynamics that are dominant after the bleaching event. Fine-scale analysis of dynamics also revealed cohorts that dominated during different periods and showed successional dynamics on seasonal and longer time scales due to temperature fluctuation and gradual changes in mean residence time in the reactor, respectively.Conclusions: Our work highlights that communities can assume different stable states under highly similar environmental conditions and that a specific disturbance threshold may lead to a rapid shift in community composition.