Anastasiia Merdalimova

Ms. Anastasiia Merdalimova

Skoltech
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 March 2019 in Applied Sciences
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Journal Article
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Anastasiia MerdalimovaAnastasiia Merdalimova
Anastasiia Merdalimova
VCVasiliy Chernyshev
Vasiliy Chernyshev
DNDaniil Nozdriukhin
Daniil Nozdriukhin
PRPolina Grigorievna Rudakovskaya
Polina Grigorievna Rudakovskaya
Dmitry GorinDmitry Gorin
Dmitry Gorin
AYAlexey Yashchenok
Alexey Yashchenok
The concept of liquid biopsy has emerged as a novel approach for cancer screening, which is based on the analysis of circulating cancer biomarkers in body fluids. Among the various circulating cancer biomarkers, including Food and Drug Administration (FDA)-approved circulating tumor cells (CTC) and circulating tumor DNA (ctDNA), exosomes have attracted tremendous attention due to their ability to diagnose cancer in its early stages with high efficiency. Recently, surface-enhanced Raman spectroscopy (SERS) has been applied for the detection of cancer exosomes due to its high sensitivity, specificity, and multiplexing capability. In this article, we review recent progress in the development of SERS-based technologies for in vitro identification of circulating cancer exosomes. The accent is made on the detection strategies and interpretation of the SERS data. The problems of detecting cancer-derived exosomes from patient samples and future perspectives of SERS-based diagnostics are also discussed.

31 January 2021 in Polymers
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MSMaria Slyusarenko
Maria Slyusarenko
Nadezhda NikiforovaNadezhda Nikiforova
Nadezhda Nikiforova
ESElena Sidina
Elena Sidina
INInga Nazarova
Inga Nazarova
Vladimir EgorovVladimir Egorov
Vladimir Egorov
Anastasia MalekAnastasia Malek
Anastasia Malek
The aim of the study was to explore the polyethylene glycol–dextran two-phase polymer system formed in human plasma to isolate the exosome-enriched fraction of plasma extracellular nanovesicles (ENVs). Systematic analysis was performed to determine the optimal combination of the polymer mixture parameters (molecular mass and concentration) that resulted in phase separation. The separated phases were analyzed by nanoparticle tracking analysis and Raman spectroscopy. The isolated vesicles were characterized by atomic force microscopy and dot blotting. In conclusion, the protein and microRNA contents of the isolated ENVs were assayed by flow cytometry and by reverse transcription followed by quantitative polymerase chain reaction (RT-qPCR), respectively. The presented results revealed the applicability of a new method for plasma ENV isolation and further analysis with a diagnostic purpose.

23 March 2022 in Physical Chemistry Chemical Physics
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JCJulijana Cvjetinovic
Julijana Cvjetinovic
Anastasiia MerdalimovaAnastasiia Merdalimova
Anastasiia Merdalimova
MKMaria Kirsanova
Maria Kirsanova
PSPavel A. Somov
Pavel A. Somov
DNDaniil V. Nozdriukhin
Daniil V. Nozdriukhin
Dmitry GorinDmitry Gorin
Dmitry Gorin
A novel eco-friendly approach based on a combination of layer-by-layer and freezing-induced loading techniques implemented to modify diatomite using gold nanoparticles ensures surface-enhanced Raman scattering and photoacoustic signal amplification.

31 December 2021 in Biosensors
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Anastasiia MerdalimovaAnastasiia Merdalimova
Anastasiia Merdalimova
PRPolina G. Rudakovskaya
Polina G. Rudakovskaya
TETimur Ermatov
Timur Ermatov
ASAlexander Smirnov
Alexander Smirnov
SKSergey S. Kosolobov
Sergey S. Kosolobov
Dmitry GorinDmitry Gorin
Dmitry Gorin
Surface-enhanced Raman spectroscopy (SERS) is a powerful technique for biosensing. However, SERS analysis has several concerns: the signal is limited by a number of molecules and the area of the plasmonic substrate in the laser hotspot, and quantitative analysis in a low-volume droplet is confusing due to the change of concentration during quick drying. The usage of hollow-core microstructured optical fibers (HC-MOFs) is thought to be an effective way to improve SERS sensitivity and limit of detection through the effective irradiation of a small sample volume filling the fiber capillaries. In this paper, we used layer-by-layer assembly as a simple method for the functionalization of fiber capillaries by gold nanoparticles (seeds) with a mean diameter of 8 nm followed by UV-induced chloroauric acid reduction. We also demonstrated a simple and quick technique used for the analysis of the SERS platform formation at every stage through the detection of spectral shifts in the optical transmission of HC-MOFs. The enhancement of the Raman signal of a model analyte Rhodamine 6G was obtained using such type of SERS platform. Thus, a combination of nanostructured gold coating as a SERS-active surface and a hollow-core fiber as a microfluidic channel and a waveguide is perspective for point-of-care medical diagnosis based on liquid biopsy and exhaled air analysis.

12 December 2023 in Colloids and Surfaces B: Biointerfaces
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Anastasiia MerdalimovaAnastasiia Merdalimova
Anastasiia Merdalimova
RBRoman Barmin
Roman Barmin
VVViktor Vorobev
Viktor Vorobev
AAArtem Aleksandrov
Artem Aleksandrov
DTDaria Terentyeva
Daria Terentyeva
Dmitry GorinDmitry Gorin
Dmitry Gorin

24 August 2021 in bioRxiv
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VCVasiliy Chernyshev
Vasiliy Chernyshev
RCRoman N. Chuprov-Netochin
Roman N. Chuprov-Netochin
ETEkaterina Tsydenzhapova
Ekaterina Tsydenzhapova
ESElena V. Svirshchevskaya
Elena V. Svirshchevskaya
RPRimma A. Poltavtseva
Rimma A. Poltavtseva
MSMikhail Skliar
Mikhail Skliar
A novel asymmetric depth filtration (DF) approach for isolation of extracellular vesicles (EVs) from biological fluids is presented, and its performance is compared with established methods. The developed workflow is simple, inexpensive, and relatively fast. Compared with ultracentrifugation and size-exclusion chromatography, the developed method isolates EVs with higher purity and yield. Only standard laboratory equipment is needed for its implementation, which makes it suitable for low-resource locations. The described implementation of the method is suitable for EV isolation from small biological samples in diagnostic and treatment guidance applications. Following the scale-up routes adopted in the biomanufacturing of therapeutics, which routinely rely on DF as one of the product purification steps, the developed method may be scaled up to harvesting therapeutic EVs from large volumes of growth medium.