Deep learning has served pattern classification in many applications, with a performance which often well exceeds that of other machine learning paradigms. Yet, in general, deep learning has used computational architectures built, albeit partially, by ad hoc means, and its classification decisions are not necessarily interpretable in terms of knowledge relevant to the application it serves. This is often referred to as the black box problem, which in certain applications, such as epileptic seizure prediction, can be a serious impediment. The purpose of this study is to investigate an interpretable deep learning classifier for epileptic EEG-driven seizure prediction. This neural network is interpretable because its layers can be visualized and interpreted as a result of a novel architecture where the learned weights follow from signal processing computations such as frequency sub-band and spatial filters. Consequently, the extracted features are no longer abstract as they correspond to the features commonly used for decoding EEG data. In addition, the network uses layer-wise relevance propagation to reveal pertinent features which can further explain the computations leading to the decisions. In seizure prediction experiments using the CHB-MIT data set, the method produced classification results which improved on the state-of-the art, with first network layer filters corresponding to clinically relevant frequency bands, and the input channels in the brain location in which the seizure originates contributing most significantly to the network predictions.
Background. The purpose of this study is to review the current literature on knee joint biomechanical gait data analysis for knee pathology classification. The review is prefaced by a presentation of the prerequisite knee joint biomechanics background and a description of biomechanical gait pattern recognition as a diagnostic tool. It is postfaced by discussions that highlight the current research findings and future directions. Methods. The review is based on a literature search in PubMed, IEEE Xplore, Science Direct, and Google Scholar on April 2019. Inclusion criteria admitted articles, written in either English or French, on knee joint biomechanical gait data classification in general. We recorded the relevant information pertaining to the investigated knee joint pathologies, the participants’ attributes, data acquisition, feature extraction, and selection used to represent the data, as well as the classification algorithms and validation of the results. Results. Thirty-one studies met the inclusion criteria for review. Conclusions. The review reveals that the importance of medical applications of knee joint biomechanical gait data classification and recent progress in data acquisition technology are fostering intense interest in the subject and giving a strong impetus to research. The review also reveals that biomechanical data during locomotion carry essential information on knee joint conditions to infer an early diagnosis. This survey paper can serve as a useful informative reference for research on the subject.
The assessment of genetic diversity and structure of a gene pool is a prerequisite for efficient organization, conservation, and utilization for crop improvement. This study evaluated the genetic diversity and population structure of 24 Tunisian melon accessions, by using 24 phenotypic traits and eight microsatellite (SSR) markers. A considerable phenotypic diversity among accessions was observed for many characters including those related to agronomical performance. All the microsatellites were polymorphic and detected 30 distinct alleles with a moderate (0.43) polymorphic information content. Shannon’s diversity index (0.82) showed a high degree of polymorphism between melon genotypes. The observed heterozygosity (0.10) was less than the expected heterozygosity (0.12), displaying a deficit in heterozygosity because of selection pressure. Molecular clustering and structure analyses based on SSRs separated melon accessions into five groups and showed an intermixed genetic structure between landraces and breeding lines belonging to the different botanical groups. Phenotypic clustering separated the accessions into two main clusters belonging to sweet and non-sweet melon; however, a more precise clustering among inodorus, cantalupensis, and reticulatus subgroups was obtained using combined phenotypic–molecular data. The discordance between phenotypic and molecular data was confirmed by a negative correlation (r = −0.16, p = 0.06) as revealed by the Mantel test. Despite these differences, both markers provided important information about the diversity of the melon germplasm, allowing the correct use of these accessions in future breeding programs. Together they provide a powerful tool for future agricultural and conservation tasks.
Monitoring patients at risk of epileptic seizure is critical for optimal treatment and ensuing the reduction of seizure risk and complications. In general, seizure detection is done manually in hospitals and involves time-consuming visual inspection and interpretation by experts of electroencephalography (EEG) recordings. The purpose of this study is to investigate the pertinence of band-limited spectral power and signal complexity in order to discriminate between seizure and seizure-free EEG brain activity. The signal complexity and spectral power are evaluated in five frequency intervals, namely, the delta, theta, alpha, beta, and gamma bands, to be used as EEG signal feature representation. Classification of seizure and seizure-free data was performed by prevalent potent classifiers. Substantial comparative performance evaluation experiments were performed on a large EEG data record of 341 patients in the Temple University Hospital EEG seizure database. Based on statistically validated criteria, results show the efficiency of band-limited spectral power and signal complexity when using random forest and gradient-boosting decision tree classifiers (95% of the area under the curve (AUC) and 91% for both F-measure and accuracy). These results support the use of these automatic classification schemes to assist the practicing neurologist interpret EEG records more accurately and without tedious visual inspection.
The purpose of this study is (1) to provide EEG feature complexity analysis in seizure prediction by inter-ictal and pre-ital data classification and, (2) to assess the between-subject variability of the considered features. In the past several decades, there has been a sustained interest in predicting epilepsy seizure using EEG data. Most methods classify features extracted from EEG, which they assume are characteristic of the presence of an epilepsy episode, for instance, by distinguishing a pre-ictal interval of data (which is in a given window just before the onset of a seizure) from inter-ictal (which is in preceding windows following the seizure). To evaluate the difficulty of this classification problem independently of the classification model, we investigate the complexity of an exhaustive list of 88 features using various complexity metrics, i.e., the Fisher discriminant ratio, the volume of overlap, and the individual feature efficiency. Complexity measurements on real and synthetic data testbeds reveal that that seizure prediction by pre-ictal/inter-ictal feature distinction is a problem of significant complexity. It shows that several features are clearly useful, without decidedly identifying an optimal set.