Si Chen

Dr. Si Chen

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
19 December 2017 in npj Systems Biology and Applications
Verified
Journal Article
Open access
PDF file
JWJared C. Weddell
Jared C. Weddell
SCSi Chen
Si Chen
PIP. I. Imoukhuede
P. I. Imoukhuede
The ability to control vascular endothelial growth factor (VEGF) signaling offers promising therapeutic potential for vascular diseases and cancer. Despite this promise, VEGF-targeted therapies are not clinically effective for many pathologies, such as breast cancer. VEGFR1 has recently emerged as a predictive biomarker for anti-VEGF efficacy, implying a functional VEGFR1 role beyond its classically defined decoy receptor status. Here we introduce a computational approach that accurately predicts cellular responses elicited via VEGFR1 signaling. Aligned with our model prediction, we show empirically that VEGFR1 promotes macrophage migration through PLCγ and PI3K pathways and promotes macrophage proliferation through a PLCγ pathway. These results provide new insight into the basic function of VEGFR1 signaling while offering a computational platform to quantify signaling of any receptor.

27 November 2017 in Scientific Reports
Verified
Journal Article
Open access
PDF file
SMSpencer Mamer
Spencer Mamer
SCSi Chen
Si Chen
JWJared C. Weddell
Jared C. Weddell
APAlexandra Palasz
Alexandra Palasz
AWAshley Wittenkeller
Ashley Wittenkeller
PIP. I. Imoukhuede
P. I. Imoukhuede
Nearly all studies of angiogenesis have focused on uni-family ligand-receptor binding, e.g., VEGFs bind to VEGF receptors, PDGFs bind to PDGF receptors, etc. The discovery of VEGF-PDGFRs binding challenges this paradigm and calls for investigation of other ligand-receptor binding possibilities. We utilized surface plasmon resonance to identify and measure PDGF-to-VEGFR binding rates, establishing cut-offs for binding and non-binding interactions. We quantified the kinetics of the recent VEGF-A:PDGFRβ interaction for the first time with KD = 340 pM. We discovered new PDGF:VEGFR2 interactions with PDGF-AA:R2 KD = 530 nM, PDGF-AB:R2 KD = 110 pM, PDGF-BB:R2 KD = 40 nM, and PDGF-CC:R2 KD = 70 pM. We computationally predict that cross-family PDGF binding could contribute up to 96% of VEGFR2 ligation in healthy conditions and in cancer. Together the identification, quantification, and simulation of these novel cross-family interactions posits new mechanisms for understanding anti-angiogenic drug resistance and presents an expanded role of growth factor signaling with significance in health and disease.

11 July 2018 in Frontiers in Bioengineering and Biotechnology
Verified
Journal Article
Open access
PDF file
SCSi Chen
Si Chen
TLThien Le
Thien Le
BHBrendan A. C. Harley
Brendan A. C. Harley
PIP. I. Imoukhuede
P. I. Imoukhuede
Dysregulation of tyrosine kinase receptor (RTK) signaling pathways play important roles in glioblastoma (GBM). However, therapies targeting these signaling pathways have not been successful, partially because of drug resistance. Increasing evidence suggests that tumor heterogeneity, more specifically, GBM-associated stem and endothelial cell heterogeneity, may contribute to drug resistance. In this perspective article, we introduce a high-throughput, quantitative approach to profile plasma membrane RTKs on single cells. First, we review the roles of RTKs in cancer. Then, we discuss the sources of cell heterogeneity in GBM, providing context to the key cells directing resistance to drugs. Finally, we present our provisionally patented qFlow cytometry approach, and report results of a “proof of concept” patient-derived xenograft GBM study.

6 August 2015 in Cellular and Molecular Bioengineering
Verified
Journal Article
Closed access
PDF file
SCSi Chen
Si Chen
XGXinyi Guo
Xinyi Guo
OIOsazomon Imarenezor
Osazomon Imarenezor
PIP. I. Imoukhuede
P. I. Imoukhuede

15 May 2019 in Analytical Chemistry
Verified
Journal Article
Closed access
SCSi Chen
Si Chen
PIP. I. Imoukhuede
P. I. Imoukhuede

26 February 2017
Verified
Book Chapter
Closed access
PDF file
SCSi Chen
Si Chen
JWJared Weddell
Jared Weddell
PGPavan Gupta
Pavan Gupta
GCGrace Conard
Grace Conard
JPJames Parkin
James Parkin
PIP. I. Imoukhuede
P. I. Imoukhuede