Roman Franěk

Mr. Roman Franěk

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 April 2019 in Animals
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Journal Article
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Abdul Rasheed BalochAbdul Rasheed Baloch
Abdul Rasheed Baloch
RFRoman Franěk
Roman Franěk
TTTomas Tichopad
Tomas Tichopad
MFMichaela Fučíková
Michaela Fučíková
MRMarek Rodina
Marek Rodina
MPMartin Pšenička
Martin Pšenička
Sturgeons also known as living fossils are facing threats to their survival due to overfishing and interference in natural habitats. Sterlet (Acipenser ruthenus) due to its rapid reproductive cycle and small body size can be used as a sterile host for surrogate production for late maturing and large sturgeon species. Dead end protein (dnd1) is essential for migration of Primordial Germ Cells (PGCs), the origin of all germ cells in developing embryos. Knockout or knockdown of dnd1 can be done in order to mismigrate PGCs. Previously we have used MO and UV for the aforementioned purpose, and in our present study we have used CRISPR/Cas9 technology to knockout dnd1. No or a smaller number of PGCs were detected in crispants, and we also observed malformations in some CRISPR/Cas9 injected embryos. Furthermore, we compared three established methods to achieve sterility in sterlet, and we found higher embryo survival and hatching rates in CRISPR/Cas9, UV and MO, respectively.

18 April 2019 in PLOS ONE
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Journal Article
Open access
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RFRoman Franěk
Roman Franěk
ZMZoran Marinović
Zoran Marinović
JLJelena Lujić
Jelena Lujić
BUBéla Urbányi
Béla Urbányi
MFMichaela Fučíková
Michaela Fučíková
ÁHÁkos Horváth
Ákos Horváth
Common carp (Cyprinus carpio) is one of the most cultured fish species over the world with many different breeds and plenty of published protocols for sperm cryopreservation. However, data regarding preservation of gonadal tissue and surrogate production is still missing. A protocol for freezing common carp spermatogonia was developed through varying different factors along a set of serial subsequent experiments. Among the six cryoprotectants tested, the best survival was achieved with dimethyl sulfoxide (Me2SO). In the next experiment, a wide range of cooling rates (0.5–10°C/min) and different concentrations of Me2SO were tested resulting in the highest survival achieved using 2 M Me2SO and cooling rate of -1°C/min. When testing different tissue sizes and incubation times in the cryomedia, the highest viability was observed when incubating 100 mg tissue fragments for 30 min. Finally, sugar supplementation did not yield significant differences. When testing different equilibration (ES) and vitrification solutions (VS) used for needle-immersed vitrification, no significant differences were observed between the tested groups. Additionally, varied exposure time to VS did not improve the vitrification outcome where the viability was 4-fold lower than that of freezing. The functionality of cryopreserved cells was tested by interspecific transplantation into sterilized goldfish recipients. The exogenous origin of the germ cells in gonads of goldfish recipient was confirmed by molecular markers and incorporation rate was over 40% at 3 months post-transplantation. Results of this study can serve for long-term preservation of germplasm in carp which can be recovered in a surrogate recipient.

21 October 2019 in Reviews in Aquaculture
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Journal Article
Open access
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RFRoman Franěk
Roman Franěk
ABAbdul Rasheed Baloch
Abdul Rasheed Baloch
VKVojtěch Kašpar
Vojtěch Kašpar
TSTaiju Saito
Taiju Saito
TFTakafumi Fujimoto
Takafumi Fujimoto
MPMartin Pšenička
Martin Pšenička
An isogenic line is a group of animals with an identical genotype, and its use is widely accepted for bioresearch standardization. Isogenic lines in fish can be generated within two generations via uniparental inheritance and can facilitate studies for which standardization and consistency are required. The availability and use of isogenic lines is limited, but isogenic lines in some fish species have been generated. Their power has been demonstrated in fields including human disease modelling, drug development, toxicology and also sequencing projects. The genetic basis of desired traits in aquaculture species can be identified using isogenic lines, which, in turn, will help to improve fish culture. This review summarized knowledge regarding the present status of isogenic lines in fish including approaches for their generation and verification, as well as challenges and potential applications for basic research and aquaculture.

1 April 2019 in Cryobiology
Verified
Journal Article
Open access
RFRoman Franěk
Roman Franěk
TTTomas Tichopad
Tomas Tichopad
CSChristoph Steinbach
Christoph Steinbach
XXXuan Xie
Xuan Xie
JLJelena Lujić
Jelena Lujić
MPMartin Pšenička
Martin Pšenička
Several experiments were conducted in order to develop an optimal protocol for slow-rate freezing (-1 °C/min) and short-term storage (-80 or 4 °C) of common carp ovarian tissue fragments with an emphasis on oogonial stem cells (OSCs). Dimethyl sulfoxide (Me2SO) with concentration of 1.5 M was identified as the best cryoprotectant in comparison to propylene glycol and methanol. When comparing supplementation of sugars (glucose, trehalose, sucrose) in different concentrations (0.1, 0.3, 0.5 M), glucose and trehalose in 0.3 M were identified as optimal. Short-term storage options for ovarian tissue pieces at -80 °C and 4 °C were tested as alternatives to cryopreservation and storage in liquid nitrogen. The presence of OSCs was confirmed by immunocytochemistry and viability after storage was determined by the trypan blue exclusion test. This study identified the optimal protocol for OSC cryopreservation using slow rate freezing resulting in ∼65% viability. The frozen/thawed OSCs were labelled by PKH-26 and transplanted into goldfish recipients. The success of the transplantation was confirmed by presence of fluorescent cells in the recipient gonad and later on by RT-PCR with carp dnd1 specific primers. The results of this study can facilitate long-term preservation of common carp germplasm which can be recovered in a surrogate recipient through interspecific germ cell transplantation.

17 July 2023 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
JSJan Stundl
Jan Stundl
MMMegan L. Martik
Megan L. Martik
DCDonglei Chen
Donglei Chen
DRDesingu Ayyappa Raja
Desingu Ayyappa Raja
RFRoman Franěk
Roman Franěk
MBMarianne E. Bronner
Marianne E. Bronner
Bone is an evolutionary novelty of vertebrates, likely to have first emerged as part of ancestral dermal armor that consisted of osteogenic and odontogenic components. Whether these early vertebrate structures arose from mesoderm or neural crest cells has been a matter of considerable debate. To examine the developmental origin of the bony part of the dermal armor, we have performed in vivo lineage tracing in the sterlet sturgeon, a representative of nonteleost ray-finned fish that has retained an extensive postcranial dermal skeleton. The results definitively show that sterlet trunk neural crest cells give rise to osteoblasts of the scutes. Transcriptional profiling further reveals neural crest gene signature in sterlet scutes as well as bichir scales. Finally, histological and microCT analyses of ray-finned fish dermal armor show that their scales and scutes are formed by bone, dentin, and hypermineralized covering tissues, in various combinations, that resemble those of the first armored vertebrates. Taken together, our results support a primitive skeletogenic role for the neural crest along the entire body axis, that was later progressively restricted to the cranial region during vertebrate evolution. Thus, the neural crest was a crucial evolutionary innovation driving the origin and diversification of dermal armor along the entire body axis.

1 December 2019 in Theriogenology
Verified
Journal Article
Closed access
RFRoman Franěk
Roman Franěk
TTTomas Tichopad
Tomas Tichopad
MFMichaela Fučíková
Michaela Fučíková
CSChristoph Steinbach
Christoph Steinbach
MPMartin Pšenička
Martin Pšenička