Shibom Basu

Dr. Shibom Basu

European Molecular Biology Laboratory (EMBL), Grenoble, France

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 July 2015 in Nature
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Journal Article
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YKYanyong Kang
Yanyong Kang
XZX. Edward Zhou
X. Edward Zhou
XGXiang Gao
Xiang Gao
YHYuanzheng He
Yuanzheng He
WLWei Liu
Wei Liu
HXH. Eric Xu
H. Eric Xu
G-protein-coupled receptors (GPCRs) signal primarily through G proteins or arrestins. Arrestin binding to GPCRs blocks G protein interaction and redirects signalling to numerous G-protein-independent pathways. Here we report the crystal structure of a constitutively active form of human rhodopsin bound to a pre-activated form of the mouse visual arrestin, determined by serial femtosecond X-ray laser crystallography. Together with extensive biochemical and mutagenesis data, the structure reveals an overall architecture of the rhodopsin–arrestin assembly in which rhodopsin uses distinct structural elements, including transmembrane helix 7 and helix 8, to recruit arrestin. Correspondingly, arrestin adopts the pre-activated conformation, with a ∼20° rotation between the amino and carboxy domains, which opens up a cleft in arrestin to accommodate a short helix formed by the second intracellular loop of rhodopsin. This structure provides a basis for understanding GPCR-mediated arrestin-biased signalling and demonstrates the power of X-ray lasers for advancing the frontiers of structural biology.

14 February 2014 in Nature Communications
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UWUwe Weierstall
Uwe Weierstall
DJDaniel James
Daniel James
CWChong Wang
Chong Wang
TWThomas A. White
Thomas A. White
DWDingjie Wang
Dingjie Wang
VCVadim Cherezov
Vadim Cherezov
Lipidic cubic phase (LCP) crystallization has proven successful for high-resolution structure determination of challenging membrane proteins. Here we present a technique for extruding gel-like LCP with embedded membrane protein microcrystals, providing a continuously renewed source of material for serial femtosecond crystallography. Data collected from sub-10-μm-sized crystals produced with less than 0.5 mg of purified protein yield structural insights regarding cyclopamine binding to the Smoothened receptor.

5 December 2014 in Science
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JTJason Tenboer
Jason Tenboer
Shibom BasuShibom Basu
Shibom Basu
NZNadia Zatsepin
Nadia Zatsepin
KPKanupriya Pande
Kanupriya Pande
DMDespina Milathianaki
Despina Milathianaki
MSMarius Schmidt
Marius Schmidt
Serial femtosecond crystallography using ultrashort pulses from x-ray free electron lasers (XFELs) enables studies of the light-triggered dynamics of biomolecules. We used microcrystals of photoactive yellow protein (a bacterial blue light photoreceptor) as a model system and obtained high-resolution, time-resolved difference electron density maps of excellent quality with strong features; these allowed the determination of structures of reaction intermediates to a resolution of 1.6 angstroms. Our results open the way to the study of reversible and nonreversible biological reactions on time scales as short as femtoseconds under conditions that maximize the extent of reaction initiation throughout the crystal.

9 July 2014 in Nature
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CKChristopher Kupitz
Christopher Kupitz
Shibom BasuShibom Basu
Shibom Basu
IGIngo Grotjohann
Ingo Grotjohann
RFRaimund Fromme
Raimund Fromme
NZNadia A. Zatsepin
Nadia A. Zatsepin
PFPetra Fromme
Petra Fromme

6 May 2016 in Science
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KPKanupriya Pande
Kanupriya Pande
CHChristopher D. M. Hutchison
Christopher D. M. Hutchison
GGGerrit Groenhof
Gerrit Groenhof
AAAndy Aquila
Andy Aquila
JRJosef S. Robinson
Josef S. Robinson
MSMarius Schmidt
Marius Schmidt
Visualizing a response to light: Many biological processes depend on detecting and responding to light. The response is often mediated by a structural change in a protein that begins when absorption of a photon causes isomerization of a chromophore bound to the protein. Pande et al. used x-ray pulses emitted by a free electron laser source to conduct time-resolved serial femtosecond crystallography in the time range of 100 fs to 3 ms. This allowed for the real-time tracking of the trans-cis isomerization of the chromophore in photoactive yellow protein and the associated structural changes in the protein. Science , this issue p. 725

20 December 2013 in Science
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Journal Article
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WLWei Liu
Wei Liu
DWDaniel Wacker
Daniel Wacker
CGCornelius Gati
Cornelius Gati
GHGye Won Han
Gye Won Han
DJDaniel James
Daniel James
VCVadim Cherezov
Vadim Cherezov
G Structures: G protein–coupled receptors (GPCRs) are eukaryotic membrane proteins that have a central role in cellular communication and have become key drug targets. To overcome the difficulties of growing GPCRs crystals, Liu et al. (p. 1521 ) used an x-ray free-electron laser to determine a high-resolution structure of the serotonin receptor from microcrystals.