Marine fish populations have suffered the consequences of overfishing for a long time, leading to a loss in biodiversity. Traditional methods have been historically used to survey fish diversity but are limited to commercial species, particularly on the high seas. Environmental DNA (eDNA) has been successfully used to monitor biodiversity in aquatic environments. In this study, we monitored fish diversity in the Clarion–Clipperton Zone (CCZ) of the Eastern Pacific Ocean using eDNA metabarcoding. Our results identified 2 classes, 35 orders, 64 families, and 87 genera. The genera Mugil, Scomberomorus, and Scomber had high relative abundance in the mesopelagic and demersal zone. Fish diversity varied with sampling sites, and the greatest number of species was found at a depth of 2500 m. Environmental changes drove fish aggregation, and our results indicated that Chla was negatively correlated with fish communities, while DO was positively correlated with fish communities. This study released the fish diversity pattern and the effects of the environment in the CCZ, which would provide useful information for biodiversity management and an environmental baseline for the International Seabed Authority.

In this paper, simulation experiments were conducted to study the response of phytoplankton biomass and community composition to the influence of polymetallic nodules and sediment at four stations in the western Pacific in 2021. Chlorophyll a, pico-phytoplankton cell abundance, and metal concentration were measured before and after 24 h of deck incubation. The results show that there were three different patterns of response, namely, restrained, stimulated, and unaffected patterns. The restrained pattern appeared in the filtered treatments at station Incub.01, and the stimulated pattern appeared in the unfiltered treatments at station Incub.02. The response of the phytoplankton was not detectable at stations Incub.03 and 04. Regardless, positive and negative responses were found in the dominant pico-phytoplankton group—Prochlorococcus—and with slight variation in Synechococcus. The concentration of manganese varied among the treatments compared to that of iron and other metals. The factors affecting the growth of the phytoplankton in this study were metal concentrations and turbidity. The phytoplankton biomass baseline may also have played an important role: the lower the biomass, the higher the growth rate. This study proved that deep-sea polymetallic nodule mining will have a specific impact on surface phytoplankton biomass, but turbidity and particle retention time could be important factors in mitigating the extent of the impact.

Controversies surrounding the phylogenetic relationships within the family Apogonidae have persisted due to the limited molecular data, obscuring the evolution of these diverse tropical marine fishes. This study presents the first complete mitochondrial genome of Fowleria variegata, a previously unrepresented genus, using high-throughput Illumina sequencing. Through a comparative mitogenomic analysis, F. variegate was shown to exhibit a typical genome architecture and composition, including 13 protein-coding, 22 tRNA and 2 rRNA genes and a control region, consistent with studies of other Apogonidae species. Nearly all protein-coding genes started with ATG, while stop codons TAA/TAG/T were observed, along with evidence of strong functional constraints imposed via purifying selection. Phylogenetic reconstruction based on maximum likelihood and Bayesian approaches provided robust evidence that F. variegata forms a basal lineage closely related to P. trimaculatus within Apogonidae, offering novel perspectives into the molecular evolution of this family. By generating new mitogenomic resources and evolutionary insights, this study makes important headway in elucidating the phylogenetic relationships and mitogenomic characteristics of Apogonidae fishes. The findings provide critical groundwork for future investigations into the drivers of diversification, speciation patterns, and adaptive radiation underlying the extensive ecological diversity and biological success of these marine fishes using phylogenomics and population genomics approaches.

The quantitative evaluation of restocking and stock replenishment is essential for providing operational feedback and implementing adaptive management for future restoration projects. Since 2010, approximately 700 million juvenile shrimp (Penaeus penicillatus) have been released into Xiamen Bay, Fujian Province, China, each year, through stock replenishment programs. The recruited shrimp were sampled through three-year bottom trawl surveys from 2014 to 2017. The biological characteristics and catch equation were used to evaluate the effect of restocking and stock replenishment. The analysis uses the FAO-ICLARM Stock Assessment Tool (FISAT II) program. In general, there are two sources of recruitments—one from spawning brood stock and the other from released juvenile shrimp. We constructed an evaluation model for an effect evaluation based on Baranov’s catch equation to separate the initial recruitment volume using survey data. The relationship between body weight and total length was W = 1.638 TL^2.9307. There is no statistically significant difference between males and females. The von Bertalanffy growth parameters derived for prawns, using FiSAT II, were L_∞ = 209.6 mm and K = 0.51 per year. In spring 2014, the initial resource amount was 49,200, while the ratio of effective recruitment and parent amount was 3.92. The survival rate of the released shrimp larvae, 1.88‱, seems to be very unsatisfactory. The resource amount in summer and autumn is higher than in winter and spring. Obviously, the restocking effect is lower and the programs need to be improved. To improve the restocking effect, the replenishment performance should be adjusted to reduce the mortality rate and increase its release effectiveness. Therefore, corresponding implementations are recommended, including standard extensive culture, reduction in stress during transportation, and temporary culture.

In order to improve the understanding of the environmental impacts of polymetallic nodule mining, ecotoxicological studies were conducted on the growth of model phytoplankton species Skeletonema costatum and Prorocentrum donghaiense using cobalt and nickel. This study evaluated various physiological and ecological indicators, such as cell proliferation, chlorophyll a, pigments, total protein, and antioxidant enzyme markers. The results show that the introduction of low amounts of cobalt or nickel increased the growth rate of phytoplankton. The phytoplankton benefited from low concentrations of cobalt and nickel stress. The increased protein levels and decreased activity of antioxidant enzymes considerably impacted physiological responses during the promotion of cell abundance. High concentrations of cobalt or nickel resulted in decreased light-absorbing pigments, increased photoprotective pigments, an inactive chlorophyll content, decreased total proteins, and maximal antioxidant enzyme activity in phytoplankton. Throughout the experiment, both the phytoplankton protein and enzyme activity declined with prolonged stress, and the cells underwent age-induced damage. Thus, seabed mining’s repercussions on phytoplankton could result in both short-term growth promotion and long-term damage. These consequences depend on the impurity concentrations infiltrating the water, their duration, and the organism’s physiological responses.