John Hallsworth

Dr. John Hallsworth

Institute for Global Food Security, School of Biological Sciences, Queen’s University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, Northern Ireland, UK
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Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2014 in Astrobiology
Verified
Journal Article
Closed access
JRJohn D. Rummel
John D. Rummel
DBDavid W. Beaty
David W. Beaty
MJMelissa A. Jones
Melissa A. Jones
CBCorien Bakermans
Corien Bakermans
NBNadine G. Barlow
Nadine G. Barlow
JWJames J. Wray
James J. Wray
A committee of the Mars Exploration Program Analysis Group (MEPAG) has reviewed and updated the description of Special Regions on Mars as places where terrestrial organisms might replicate (per the COSPAR Planetary Protection Policy). This review and update was conducted by an international team (SR-SAG2) drawn from both the biological science and Mars exploration communities, focused on understanding when and where Special Regions could occur. The study applied recently available data about martian environments and about terrestrial organisms, building on a previous analysis of Mars Special Regions (2006) undertaken by a similar team. Since then, a new body of highly relevant information has been generated from the Mars Reconnaissance Orbiter (launched in 2005) and Phoenix (2007) and data from Mars Express and the twin Mars Exploration Rovers (all 2003). Results have also been gleaned from the Mars Science Laboratory (launched in 2011). In addition to Mars data, there is a considerable body of new data regarding the known environmental limits to life on Earth-including the potential for terrestrial microbial life to survive and replicate under martian environmental conditions. The SR-SAG2 analysis has included an examination of new Mars models relevant to natural environmental variation in water activity and temperature; a review and reconsideration of the current parameters used to define Special Regions; and updated maps and descriptions of the martian environments recommended for treatment as "Uncertain" or "Special" as natural features or those potentially formed by the influence of future landed spacecraft. Significant changes in our knowledge of the capabilities of terrestrial organisms and the existence of possibly habitable martian environments have led to a new appreciation of where Mars Special Regions may be identified and protected. The SR-SAG also considered the impact of Special Regions on potential future human missions to Mars, both as locations of potential resources and as places that should not be inadvertently contaminated by human activity.

7 June 2016 in Microbial Biotechnology
Verified
Journal Article
Open access
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CPCaroline Paulussen
Caroline Paulussen
JHJohn Hallsworth
John Hallsworth
SASergio Alvarez-Perez
Sergio Alvarez-Perez
WNWilliam C. Nierman
William C. Nierman
PHPhilip G. Hamill
Philip G. Hamill
BLBart Lievens
Bart Lievens
Summary: Fungi of the genus Aspergillus are widespread in the environment. Some Aspergillus species, most commonly Aspergillus fumigatus , may lead to a variety of allergic reactions and life‐threatening systemic infections in humans. Invasive aspergillosis occurs primarily in patients with severe immunodeficiency, and has dramatically increased in recent years. There are several factors at play that contribute to aspergillosis, including both fungus and host‐related factors such as strain virulence and host pulmonary structure/immune status, respectively. The environmental tenacity of Aspergilllus , its dominance in diverse microbial communities/habitats, and its ability to navigate the ecophysiological and biophysical challenges of host infection are attributable, in large part, to a robust stress‐tolerance biology and exceptional capacity to generate cell‐available energy. Aspects of its stress metabolism, ecology, interactions with diverse animal hosts, clinical presentations and treatment regimens have been well‐studied over the past years. Here, we synthesize these findings in relation to the way in which some Aspergillus species have become successful opportunistic pathogens of human‐ and other animal hosts. We focus on the biophysical capabilities of Aspergillus pathogens, key aspects of their ecophysiology and the flexibility to undergo a sexual cycle or form cryptic species. Additionally, recent advances in diagnosis of the disease are discussed as well as implications in relation to questions that have yet to be resolved.

12 December 2014 in The ISME Journal
Verified
Journal Article
Open access
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ASAndrew Stevenson
Andrew Stevenson
JCJonathan A Cray
Jonathan A Cray
JWJim P Williams
Jim P Williams
RSRicardo Santos
Ricardo Santos
RSRicha Sahay
Richa Sahay
JHJohn Hallsworth
John Hallsworth
Archaea and Bacteria constitute a majority of life systems on Earth but have long been considered inferior to Eukarya in terms of solute tolerance. Whereas the most halophilic prokaryotes are known for an ability to multiply at saturated NaCl (water activity (aw) 0.755) some xerophilic fungi can germinate, usually at high-sugar concentrations, at values as low as 0.650–0.605 aw. Here, we present evidence that halophilic prokayotes can grow down to water activities of <0.755 for Halanaerobium lacusrosei (0.748), Halobacterium strain 004.1 (0.728), Halobacterium sp. NRC-1 and Halococcus morrhuae (0.717), Haloquadratum walsbyi (0.709), Halococcus salifodinae (0.693), Halobacterium noricense (0.687), Natrinema pallidum (0.681) and haloarchaeal strains GN-2 and GN-5 (0.635 aw). Furthermore, extrapolation of growth curves (prone to giving conservative estimates) indicated theoretical minima down to 0.611 aw for extreme, obligately halophilic Archaea and Bacteria. These were compared with minima for the most solute-tolerant Bacteria in high-sugar (or other non-saline) media (Mycobacterium spp., Tetragenococcus halophilus, Saccharibacter floricola, Staphylococcus aureus and so on) and eukaryotic microbes in saline (Wallemia spp., Basipetospora halophila, Dunaliella spp. and so on) and high-sugar substrates (for example, Xeromyces bisporus, Zygosaccharomyces rouxii, Aspergillus and Eurotium spp.). We also manipulated the balance of chaotropic and kosmotropic stressors for the extreme, xerophilic fungi Aspergillus penicilloides and X. bisporus and, via this approach, their established water-activity limits for mycelial growth (∼0.65) were reduced to 0.640. Furthermore, extrapolations indicated theoretical limits of 0.632 and 0.636 aw for A. penicilloides and X. bisporus, respectively. Collectively, these findings suggest that there is a common water-activity limit that is determined by physicochemical constraints for the three domains of life.

12 January 2007 in Environmental Microbiology
Verified
Journal Article
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JHJohn Hallsworth
John Hallsworth
Michail M. YakimovMichail M. Yakimov
Michail M. Yakimov
PGPeter Golyshin
Peter Golyshin
JGJenny L. M. Gillion
Jenny L. M. Gillion
GDGiuseppe D'auria
Giuseppe D'auria
TMTerry McGenity
Terry McGenity

2 January 2015 in Physical Chemistry Chemical Physics
Verified
Journal Article
Closed access
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PBPhilip Ball
Philip Ball
JHJohn Hallsworth
John Hallsworth
The concept of “water structure” has been invoked to explain all manner of aqueous phenomena.

22 January 2013 in Microbial Biotechnology
Verified
Journal Article
Open access
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JCJonathan A. Cray
Jonathan A. Cray
ABAndrew N. W. Bell
Andrew N. W. Bell
PBPrashanth Bhaganna
Prashanth Bhaganna
AMAllen Y. Mswaka
Allen Y. Mswaka
David J. TimsonDavid J. Timson
David J. Timson
JHJohn Hallsworth
John Hallsworth
Summary: Competition between microbial species is a product of, yet can lead to a reduction in, the microbial diversity of specific habitats. Microbial habitats can resemble ecological battlefields where microbial cells struggle to dominate and/or annihilate each other and we explore the hypothesis that (like plant weeds) some microbes are genetically hard‐wired to behave in a vigorous and ecologically aggressive manner. These ‘microbial weeds’ are able to dominate the communities that develop in fertile but uncolonized – or at least partially vacant – habitats via traits enabling them to out‐grow competitors; robust tolerances to habitat‐relevant stress parameters and highly efficient energy‐generation systems; avoidance of or resistance to viral infection, predation and grazers; potent antimicrobial systems; and exceptional abilities to sequester and store resources. In addition, those associated with nutritionally complex habitats are extraordinarily versatile in their utilization of diverse substrates. Weed species typically deploy multiple types of antimicrobial including toxins; volatile organic compounds that act as either hydrophobic or highly chaotropic stressors; biosurfactants; organic acids; and moderately chaotropic solutes that are produced in bulk quantities (e.g. acetone, ethanol). Whereas ability to dominate communities is habitat‐specific we suggest that some microbial species are archetypal weeds including generalists such as: P ichia anomala , A cinetobacter spp. and P seudomonas putida ; specialists such as D unaliella salina , S accharomyces cerevisiae , L actobacillus spp. and other lactic acid bacteria; freshwater autotrophs G onyostomum semen and M icrocystis aeruginosa ; obligate anaerobes such as C lostridium acetobutylicum ; facultative pathogens such as R hodotorula mucilaginosa , P antoea ananatis and P seudomonas aeruginosa ; and other extremotolerant and extremophilic microbes such as A spergillus spp., S alinibacter ruber and H aloquadratum walsbyi . Some microbes, such as Escherichia coli , Mycobacterium smegmatis and Pseudoxylaria spp., exhibit characteristics of both weed and non‐weed species. We propose that the concept of nonweeds represents a ‘dustbin’ group that includes species such as Synodropsis spp., Polypaecilum pisce , Metschnikowia orientalis , Salmonella spp., and Caulobacter crescentus . We show that microbial weeds are conceptually distinct from plant weeds, microbial copiotrophs, r ‐strategists, and other ecophysiological groups of microorganism. Microbial weed species are unlikely to emerge from stationary‐phase or other types of closed communities; it is open habitats that select for weed phenotypes. Specific characteristics that are common to diverse types of open habitat are identified, and implications of weed biology and open‐habitat ecology are discussed in the context of further studies needed in the fields of environmental and applied microbiology.