In this exploratory study, we studied and qualitatively evaluated a prototype video data collection system to capture and analyze fish behavior in a small-scale indoor aquaculture operation. The research objective was to design and develop a hardware / software system that would have the potential to capture meaningful data from which to extract fish size, swim trajectory, and swim velocity, ultimately as information toward an assessment of fish health. The initial work presented in this paper discusses the development choices of the prototype system, including various combinations of lighting and camera positions both inside and outside of the aquaculture tanks, and several post-processing techniques to isolate fish in video, calibrate the distance from camera to fish through water, and infer fish trajectories and swim velocities. Preliminary results provided a qualitative assessment of such a system. Specific results on the system's ability to detect fishes' positions, trajectories, and velocities are presently limited to observational outcomes and descriptive statistics rather than large-scale quantitative analysis. The present work lays a foundation for a future commercially hardened system that would be required for the collection of larger datasets, which would in turn facilitate the future development of machine learning (ML) algorithms to begin to statistically correlate data to fish conditions and behaviors in near-real time.
4 February 2020 in International Journal for Numerical Methods in Biomedical Engineering
Coronary artery disease is one of the leading causes of death worldwide, and medical imaging methods such as coronary artery computed tomography are vitally important in its detection. More recently, various computational approaches have been proposed to automatically extract important artery coronary features (e.g., vessel centerlines, cross-sectional areas along vessel branches, etc.) that may ultimately be able to assist with more accurate and timely diagnoses. The current study therefore validated and benchmarked a recently developed automated 3D centerline extraction method for coronary artery centerline tracking using synthetically segmented coronary artery models based on the widely used Rotterdam Coronary Artery Algorithm Evaluation Framework (RCAAEF) training dataset. Based on standard accuracy metrics and the ground truth centerlines of all 32 coronary vessel branches in the RCAAEF training dataset, this 3D divide and conquer Voronoi diagram method performed exceptionally well, achieving an average overlap accuracy (OV) of 99.97%, overlap until first error (OF) of 100%, overlap of the clinically relevant portion of the vessel (OT) of 99.98%, and an average error distance inside the vessels (AI) of only 0.13 mm. Accuracy was also found to be exceptionally for all four coronary artery sub-types, with average OV values of 99.99% for right coronary arteries, 100% for left anterior descending arteries, 99.96% for left circumflex arteries, and 100% for large side-branch vessels. These results validate that the proposed method can be employed to quickly, accurately, and automatically extract 3D centerlines from segmented coronary arteries, and indicate that it is likely worthy of further exploration given the importance of this topic.
31 March 2020 in Journal of 3D Printing in Medicine
Aim: This study is aimed to compare the structure and performance of 3D-printed and microfabricated microneedle arrays (MNAs). Materials & methods: MNAs were produced using either stereolithography...