Artur Ratkiewicz

Dr. Artur Ratkiewicz

orcid

Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 December 1993 in The Journal of Chemical Physics
Verified
Journal Article
Closed access
RMRobert Moszynski
Robert Moszynski
BJBogumil/ Jeziorski
Bogumil/ Jeziorski
ARArtur Ratkiewicz
Artur Ratkiewicz
SRStanisl/Aw Rybak
Stanisl/Aw Rybak

10 January 2018 in Bioscience Reports
Verified
Journal Article
Open access
PDF file
ATAdam Tylicki
Adam Tylicki
ZŁZenon Łotowski
Zenon Łotowski
MSMagdalena Siemieniuk
Magdalena Siemieniuk
ARArtur Ratkiewicz
Artur Ratkiewicz
Thiamine plays a very important coenzymatic and non-coenzymatic role in the regulation of basic metabolism. Thiamine diphosphate is a coenzyme of many enzymes, most of which occur in prokaryotes. Pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes as well as transketolase are the examples of thiamine-dependent enzymes present in eukaryotes, including human. Therefore, thiamine is considered as drug or diet supplement which can support the treatment of many pathologies including neurodegenerative and vascular system diseases. On the other hand, thiamine antivitamins, which can interact with thiamine-dependent enzymes impeding their native functions, thiamine transport into the cells or a thiamine diphosphate synthesis, are good propose to drug design. The development of organic chemistry in the last century allowed the synthesis of various thiamine antimetabolites such as amprolium, pyrithiamine, oxythiamine, or 3-deazathiamine. Results of biochemical and theoretical chemistry research show that affinity to thiamine diphosphate-dependent enzymes of these synthetic molecules exceeds the affinity of native coenzyme. Therefore, some of them have already been used in the treatment of coccidiosis (amprolium), other are extensively studied as cytostatics in the treatment of cancer or fungal infections (oxythiamine and pyrithiamine). This review summarizes the current knowledge concerning the synthesis and mechanisms of action of selected thiamine antivitamins and indicates the potential of their practical use.

4 April 2014 in Structural Chemistry
Verified
Journal Article
Open access
PDF file
TMTam V.-T. Mai
Tam V.-T. Mai
MDMinh V. Duong
Minh V. Duong
XLXuan T. Le
Xuan T. Le
LHLam Huynh
Lam Huynh
ARArtur Ratkiewicz
Artur Ratkiewicz
Thermal rate constants of the CH4 + O2 = CH3 + HO2 reaction were calculated from first principles using both the conventional transition state theory (TST) and canonical variational TST methods with correction from the explicit hindered rotation treatment. The CCSD(T)/aug-cc-pVTZ//BH&HLYP/aug-cc-pVDZ method was used to characterize the necessary potential energy surface along the minimum energy path. We found that the correction for hindered rotation treatment, as well as the re-crossing effects noticeably affect the rate constants of the title process. The calculated rate constants for both forward and reverse directions are expressed in the modified Arrhenius form as \(k_{\text{forward}}^{\text{CVT/HR}} = 2.157 \times 10^{ - 18} \times T^{2.412} \times \,\exp \,( - \frac{25812}{T})\) and \(k_{\text{reverse}}^{\text{CVT/HR}} = 1.375 \times 10^{ - 19} \times T^{2.183} \times \,{\kern 1pt} \exp \,\,(\frac{2032}{T})\) (cm3 molecule−1 s−1) for the temperature range of 300–2,500 K. Being in good agreement with literature data, the results provide solid basis information for the investigation of the entire alkane + O2 = alkyl radical + HO2 reaction class.

18 November 2005 in The Journal of Physical Chemistry A
Verified
Journal Article
Closed access
LHLam Huynh
Lam Huynh
ARArtur Ratkiewicz
Artur Ratkiewicz
TTThanh N. Truong
Thanh N. Truong

14 December 2002 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
ARArtur Ratkiewicz
Artur Ratkiewicz
TTThanh N. Truong
Thanh N. Truong

Verified
Journal Article
Open access
PDF file
WAWróbel Agnieszka
Wróbel Agnieszka
MBMaciej Baradyn
Maciej Baradyn
ARArtur Ratkiewicz
Artur Ratkiewicz
DDDanuta Drozdowska
Danuta Drozdowska
Eighteen previously undescribed trimethoprim (TMP) analogs containing amide bonds (1–18) were synthesized and compared with TMP, methotrexate (MTX), and netropsin (NT). These compounds were designed as potential minor groove binding agents (MGBAs) and inhibitors of human dihydrofolate reductase (hDHFR). The all-new derivatives were obtained via solid phase synthesis using 4-nitrophenyl Wang resin. Data from the ethidium displacement test confirmed their DNA-binding capacity. Compounds 13–14 (49.89% and 43.85%) and 17–18 (41.68% and 42.99%) showed a higher binding affinity to pBR322 plasmid than NT. The possibility of binding in a minor groove as well as determination of association constants were performed using calf thymus DNA, T4 coliphage DNA, poly (dA-dT)2, and poly (dG-dC)2. With the exception of compounds 9 (IC50 = 56.05 µM) and 11 (IC50 = 55.32 µM), all of the compounds showed better inhibitory properties against hDHFR than standard, which confirms that the addition of the amide bond into the TMP structures increases affinity towards hDHFR. Derivatives 2, 6, 13, 14, and 16 were found to be the most potent hDHFR inhibitors. This molecular modelling study shows that they interact strongly with a catalytically important residue Glu-30.