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Fungi are an important, yet often, neglected component of the aquatic microflora, and is responsible for primary decomposition and further processing of organic matter. By comparison, the ecological roles of terrestrial fungi have been well-studied, but the diversity and function of fungi that populate aquatic environments remain poorly understood. Here, the impact of urbanization on fungal diversity and community composition in the canal system of Suzhou was assessed by sequencing the internal transcribed spacer 1 (ITS1) region of the rRNA operon. It was amplified from environmental DNA that has been extracted from water samples and pre-deployed decomposing leaves collected from nine sampling locations (high, medium and low urbanization) over two seasons. The fungal diversity and community composition were determined by bioinformatic analysis of the large DNA sequence datasets generated to identify operational taxonomic units (OTUs) for phylogenetic assignment; over 1 million amplicons were sequenced from 36 samples. The alpha-diversity estimates showed high differences in fungal diversity between water and leaf samples, and winter versus summer. Higher numbers of fungal OTUs were identified in both water and leaf samples collected in the summer, and fungal diversity was also generally higher in water than on colonized leaves in both seasons. The fungal community on leaves was usually dominated by Ascomycetes, especially in winter, while water samples contained more diversity at phylum level with Chytridiomycetes often prominent, particularly in summer. At a genus level, a very high relative abundance of Alternaria on leaves was observed in winter at all locations, in contrast to very low abundance of this genus across all water samples. Fungal community composition also varied between sampling locations (i.e., urbanization); in cluster analysis, samples from high urbanization locations formed a distinct cluster, with medium and low urbanization samples clustering together or in some instances, separately. Redundancy analysis shed further light on the relationships between variation in fungal community composition and water physico-chemical properties. Fungal community diversity variation and correlation with different parameters is discussed in detail, but overall, the influence of season outweighed that of urbanization. This study is significant in cataloguing the impact of urbanization on fungal diversity to inform future restoration of urban canal systems on the importance of protecting the natural aquatic fungal flora.
Tianma Yuan; Haihan Zhang; Qiaoli Feng; Xiangyu Wu; Yixin Zhang; Alan McCarthy; Raju Sekar. Changes in Fungal Community Structure in Freshwater Canals across a Gradient of Urbanization. Water 2020, 12, 1917 .
AMA StyleTianma Yuan, Haihan Zhang, Qiaoli Feng, Xiangyu Wu, Yixin Zhang, Alan McCarthy, Raju Sekar. Changes in Fungal Community Structure in Freshwater Canals across a Gradient of Urbanization. Water. 2020; 12 (7):1917.
Chicago/Turabian StyleTianma Yuan; Haihan Zhang; Qiaoli Feng; Xiangyu Wu; Yixin Zhang; Alan McCarthy; Raju Sekar. 2020. "Changes in Fungal Community Structure in Freshwater Canals across a Gradient of Urbanization." Water 12, no. 7: 1917.
Urbanization is increasing worldwide and is happening at a rapid rate in China in line with economic development. Urbanization can lead to major changes in freshwater environments through multiple chemical and microbial contaminants. We assessed the impact of urbanization on physicochemical characteristics and microbial loading in canals in Suzhou, a city that has experienced rapid urbanization in recent decades. Nine sampling locations covering three urban intensity classes (high, medium and low) in Suzhou were selected for field studies and three locations in Huangshan (natural reserve) were included as pristine control locations. Water samples were collected for physicochemical, microbiological and molecular analyses. Compared to medium and low urbanization sites, there were statistically significant higher levels of nutrients and total and thermotolerant coliforms (or fecal coliforms) in highly urbanized locations. The effect of urbanization was also apparent in the abundances of human-associated fecal markers and bacterial pathogens in water samples from highly urbanized locations. These results correlated well with land use types and anthropogenic activities at the sampling sites. The overall results indicate that urbanization negatively impacts water quality, providing high levels of nutrients and a microbial load that includes fecal markers and pathogens.
Tianma Yuan; Kiran Kumar Vadde; Jonathan D. Tonkin; Jianjun Wang; Jing Lu; Zimeng Zhang; Yixin Zhang; Alan J. McCarthy; Raju Sekar. Urbanization Impacts the Physicochemical Characteristics and Abundance of Fecal Markers and Bacterial Pathogens in Surface Water. International Journal of Environmental Research and Public Health 2019, 16, 1739 .
AMA StyleTianma Yuan, Kiran Kumar Vadde, Jonathan D. Tonkin, Jianjun Wang, Jing Lu, Zimeng Zhang, Yixin Zhang, Alan J. McCarthy, Raju Sekar. Urbanization Impacts the Physicochemical Characteristics and Abundance of Fecal Markers and Bacterial Pathogens in Surface Water. International Journal of Environmental Research and Public Health. 2019; 16 (10):1739.
Chicago/Turabian StyleTianma Yuan; Kiran Kumar Vadde; Jonathan D. Tonkin; Jianjun Wang; Jing Lu; Zimeng Zhang; Yixin Zhang; Alan J. McCarthy; Raju Sekar. 2019. "Urbanization Impacts the Physicochemical Characteristics and Abundance of Fecal Markers and Bacterial Pathogens in Surface Water." International Journal of Environmental Research and Public Health 16, no. 10: 1739.
Taihu Lake is the third largest freshwater lake in China and serves as a drinking water source for ~30 million residents. Tiaoxi River is one of the main rivers connected to this lake and contributes >60% of the source water. Taihu Lake has been facing various environmental issues; therefore, it is important to study the water quality of its inflow rivers. This study aimed to evaluate the physico-chemical and microbiological characteristics of Tiaoxi River and to determine the spatial and seasonal variations in the water quality. Water samples were collected from 25 locations across the Tiaoxi River in three seasons in 2014–2015. Fourteen water quality parameters including multiple nutrients and indicator bacteria were assessed, and the data analyzed by multivariate statistical analyses. The physico-chemical analysis showed high levels (>1 mg/L) of total nitrogen (TN) in all locations for all seasons. Total phosphorus (TP), nitrite-N (NO2-N), and ammonium-N (NH4-N) exceeded the acceptable limits in some locations and fecal coliform counts were high (>250 CFU/100 mL) in 15 locations. Hierarchical cluster analysis showed that the sampling sites could be grouped into three clusters based on water quality, which were categorized as low, moderate, and high pollution areas. Principal component analysis (PCA) applied to the entire dataset identified four principal components which explained 83% of the variation; pH, conductivity, TP, and NO3-N were found to be the key parameters responsible for variations in water quality. The overall results indicated that some of the sampling locations in the Tiaoxi River are heavily contaminated with pollutants from various sources which can be correlated with land use patterns and anthropogenic activities.
Kiran Kumar Vadde; Jianjun Wang; Long Cao; Tianma Yuan; Alan J. McCarthy; Raju Sekar. Assessment of Water Quality and Identification of Pollution Risk Locations in Tiaoxi River (Taihu Watershed), China. Water 2018, 10, 183 .
AMA StyleKiran Kumar Vadde, Jianjun Wang, Long Cao, Tianma Yuan, Alan J. McCarthy, Raju Sekar. Assessment of Water Quality and Identification of Pollution Risk Locations in Tiaoxi River (Taihu Watershed), China. Water. 2018; 10 (2):183.
Chicago/Turabian StyleKiran Kumar Vadde; Jianjun Wang; Long Cao; Tianma Yuan; Alan J. McCarthy; Raju Sekar. 2018. "Assessment of Water Quality and Identification of Pollution Risk Locations in Tiaoxi River (Taihu Watershed), China." Water 10, no. 2: 183.