Bernd Epe

Bernd Epe


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 September 2011 in Photochemical & Photobiological Sciences
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BEBernd Epe
Bernd Epe
DNA damage induced by photosensitization is not only responsible for the genotoxic effects of various types of drugs in the presence of light, but is also relevant for some of the adverse effects of sunlight, in particular in the UVA and visible range of the spectrum. The types of DNA modifications induced are very diverse and include pyrimidine dimers, covalent adducts, various base modifications generated by oxidation, single-strand breaks and (regular and oxidized) sites of base loss. The ratios in which the various modifications are formed (damage spectra) can be regarded as a fingerprint of the damaging mechanism. Here, we describe the damage spectra of various classes of photosensitizers in relation to the underlying damaging mechanisms. In mammalian cells irradiated with solar radiation, damage at wavelengths <400 nm is characteristic for a (not yet identified) endogenous type-I or type-II photosensitizer. In the UVA range, however, both direct DNA excitation and photosensitized damage appear to be relevant, and there are indications that other chromophore(s) are involved than in the visible range.

15 September 2003 in Nucleic Acids Research
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CFClaudia Flohr
Claudia Flohr
ABAlexander Bürkle
Alexander Bürkle
JRJ. Pablo Radicella
J. Pablo Radicella
BEBernd Epe
Bernd Epe
Activation of poly(ADP‐ribose)polymerases 1 and 2 (PARP‐1 and PARP‐2) is one of the earliest responses of mammalian cells to DNA damage by numerous genotoxic agents. We have analysed the influence of PARP inhibition, either achieved by over‐expression of the DNA binding domain of PARP‐1 or by treatment with 3,4‐dihydro‐5‐[4‐(1‐piperidinyl)butoxyl]‐1(2H)‐isoquinolinone, on the repair of single‐strand breaks (SSB), pyrimidine dimers and oxidative base modifications sensitive to Fpg protein (mostly 8‐hydroxyguanine) in mammalian cells at very low, non‐cytotoxic levels of DNA damage. The data show that the repair rates of all three types of DNA damage are significantly lower in PARP‐inhibited cells. Importantly, the retardation of the repair of base modifications is not associated with accumulation of intermediates such as SSB or abasic sites. Moreover, the influence of the PARP inhibition is not observed in cells deficient in Cockayne syndrome B protein (Csb). The results indicate that PARP activation and Csb are both involved in a novel mechanism that accelerates the global repair of various types of DNA modifications.

1 June 2017 in Free Radical Biology and Medicine
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MSMarco Seifermann
Marco Seifermann
BEBernd Epe
Bernd Epe

1 January 2004 in Photochemistry and Photobiology
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DRDanaboyina Ramaiah
Danaboyina Ramaiah
IEInge Eckert
Inge Eckert
KAKalliat T. Arun
Kalliat T. Arun
LWLydia Weidenfeller
Lydia Weidenfeller
BEBernd Epe
Bernd Epe
Halogenated squaraine dyes 1 and 2 possess favorable photophysical and in vitro photobiological properties that make these new class of molecules interesting for photodynamic therapeutic applications. For a better understanding of the mechanism of their photobiological activity, we have analyzed the DNA damage and the cytotoxicity induced by these photosensitizers in mammalian cells and cell-free systems in the presence and absence of various additives and scavengers. Both photoactivated squaraines were found to be similar efficient in inducing single-strand breaks (SSB) in cell-free DNA when compared with the cellular DNA. Superoxide dismutase and catalase did not show any influence. However, the presence of tert-butanol and glutathione inhibited the formation of the DNA SSB, indicating an indirect (possibly squaraine radical mediated) mechanism under cell-free conditions. Replacing H2O in the buffer by D2O resulted in a five- to six-fold increase in the number of the SSB in cell-free DNA and a ...

30 November 2011 in Organic & Biomolecular Chemistry
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MGM. Micaela Gonzalez
M. Micaela Gonzalez
MVMariana Vignoni
Mariana Vignoni
MPMagali Pellon-Maison
Magali Pellon-Maison
MAMatias A. Ales-Gandolfo
Matias A. Ales-Gandolfo
MGMaria R. Gonzalez-Baro
Maria R. Gonzalez-Baro
FCFranco M. Cabrerizo
Franco M. Cabrerizo
β-Carbolines (βCs) are a group of alkaloids present in many plants and animals. It has been suggested that these alkaloids participate in a variety of significant photosensitized processes. Despite their well-established natural occurrence, the main biological role of these alkaloids and the mechanisms involved are, to date, poorly understood. In the present work, we examined the capability of three important βCs (norharmane, harmane and harmine) and two of its derivatives (N-methyl-norharmane and N-methyl-harmane) to induce DNA damage upon UV-A excitation, correlating the type and extent of the damage with the photophysical characteristics and DNA binding properties of the compounds. The results indicate that DNA damage is mostly mediated by a direct type-I photoreaction of the protonated βCs after non-intercalative electrostatic binding. Reactive oxygen species such as singlet oxygen and superoxide are not involved to a major extent, as indicated by the only small influence of D2O and of superoxide dismutase on damage generation. An analysis with repair enzymes revealed that oxidative purine modifications such as 8-oxo-7,8-dihydroguanine, sites of base loss and single-strand breaks (SSB) are generated by all βCs, while only photoexcited harmine gives rise to the formation of cyclobutane pyrimidine dimers as well.