Phytoplankton is one of the five biological quality elements used in the assessment of the ecological status of surface waters according to the European Water Framework Directive established in 2000. In this study, we determined the ecological status of three small and shallow lakes in the Polesie Plain, Eastern Poland, by using indices based on phytoplankton assemblages. The predominant phytoplankton of all three lakes were filamentous cyanobacteria, both heterocystous and non-heterocystous, represented by the genera Aphanizomenon, Planktothrix, Limnothrix, and Planktolyngbya. We used the Hungarian Q index, German PSI (Phyto-See-Index), and recently developed PMPL (Phytoplankton Metrics for Polish Lakes) for Polish lakes. We compared the results from the calculation of the indices to physicochemical data obtained from the lake water and Carlson’s Trophy State Index (TSI). On the basis of TSI, Gumienek and Glinki lakes were classified as advanced eutrophic, whereas Czarne Lake had a better score and was classified as slightly eutrophic. The trophic state was generally confirmed by the ecological status based on phytoplankton indices and also showed the diverse ecological situation in the lakes studied. Based on the Polish PMPL, Gumienek Lake was classified as having bad status (ecological quality ratio (EQR) = 0.05), whereas Glinki and Czarne lakes were classified within the poor status range (EQR = 0.25 and 0.35, respectively). However, based on the German PSI, the lakes were classified in a different manner: the status of Gumienek and Czarne lakes was better, but unsatisfactory, because they were still below the boundary for the good status category recommended by the European Commission. The best ecological status for the studied lakes was obtained using the Q index: Gumienek Lake with EQR = 0.42 had a moderate status, and Czarne Lake with EQR = 0.62 obtained a good status. However, Glinki Lake, with EQR = 0.40, was classified at the boundary for poor and moderate status. Based on our study, it seems that the best index for ecological status assessment based on phytoplankton that can be used for small lakes is the Polish (PMPL) index.

Cyanobacteria dominate lakes under diverse trophic conditions. Of these, two harmful filamentous cyanobacterial species, namely Planktothrix agardhii and P. rubescens, occupy completely different ecological niches in which they can form dense populations. In the present study, we investigated the effects of environmental conditions on the growth and vertical distribution of these species in lakes of different trophic statuses. Moreover, we underscored certain inconveniences in the assessment of the ecological status of lakes according to the European Union Water Framework Directive. The highest biomass of P. agardhii was recorded in eutrophic lake at a depth of 0.5–1 m, under high light intensity. Meanwhile, the highest biomass of P. rubescens, at which the deep chlorophyll maximum was recorded, was observed in mesotrophic lakes at a depth of 11–12 m, often below the euphotic zone under very low light intensity. P. rubescens, but not P. agardhii, exerted a strong allelopathic effect on the diversity and biomass of phytoplankton. Moreover, both species utilised different dissolved nitrogen fractions for their growth; specifically, P. agardhii used ammonium nitrogen, whilst P. rubescens used nitrate nitrogen. Furthermore, dissolved phosphorus produced a potentially limiting effect on P. rubescens growth. Overall, the tested Polish PMPL, German PSI, and Estonian phytoplankton indices were indeed useful in the assessment of the ecological status of lakes, albeit limited to the eutrophic lake with a high biomass of cyanobacteria (P. agardhii) in the upper water layers. However, problems arose in the proper assessment of lakes with a high biomass of cyanobacteria (P. rubescens) with a deep chlorophyll maximum outside the range of the euphotic zone. In such cases, two of the tested indices, namely the Polish and German indices, allowed sample collection from the euphotic layers, which significantly affected the number of samples included in the calculation. Consequently, the correct calculation of the ecological status of the lake was uncertain. Only the Estonian index allowed for a sample collection from two to three thermal layers of water, including the bloom layer of P. rubescens. Hence, the Estonian index offered the best fit for calculations.

It is well-known that recent climatic changes have strongly affected aquatic ecosystems. In this study, we examined the complex factors determining the development of phytoplankton communities during the vegetative growth season in eutrophic lakes located in a temperate zone in eastern Poland. Our analysis enabled us to divide the data into two different periods: years with a cold winter and low total precipitation, and those with a mild winter and high total precipitation. The analysis showed that the soluble and total nitrogen content, concentration of chlorophyll a, total phytoplankton biomass, and biomasses of Cyanobacteria and Cryptophyceae were significantly higher in the vegetative growth season in the year after a mild winter, whereas the soluble and total phosphorus content and phytoplankton biodiversity were significantly lower in these years. Hence, climate warming indirectly led to the loss of biodiversity in the phytoplankton communities in the studied lakes of temperate zone. During this study, we also tested the effects of increases in air temperature and total precipitation on phytoplankton communities over short time periods (14 and 28 days). The results showed that the total phytoplankton biomass and the chlorophyll a concentration were only positively correlated with the air temperature. All of the features described in this study showed how sensitive lake ecosystems are to climatic fluctuations.