Yan Shi

Yan Shi


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2016 in Clinical and Translational Gastroenterology
Verified
Journal Article
Open access
KMKosuke Mima
Kosuke Mima
YCYin Cao
Yin Cao
ACAndrew T Chan
Andrew T Chan
ZQZhi Rong Qian
Zhi Rong Qian
JNJonathan A Nowak
Jonathan A Nowak
Shuji OginoShuji Ogino
Shuji Ogino
Al carcinoma enriched withF. nucleatummight gradually increase along the bowel subsites from rectum to cecum. METHODS: A retrospective, cross-sectional analysis was conducted on 1,102 colon and rectal carcinomas in molecular pathological epidemiology databases of the Nurses' Health Study and the Health Professionals Follow-up Study. We measured the amount ofF. nucleatumDNA in colorectal tumor tissue using a quantitative PCR assay and equally dichotomizedF. nucleatum-positive cases (high vs. low). We used multivariable logistic regression analysis to examine the relationship of a bowel subsite variable (rectum, rectosigmoid junction, sigmoid colon, descending colon, splenic flexure, transverse colon, hepatic flexure, ascending colon, and cecum) with the amount ofF. nucleatum. RESULTS: The proportion ofF. nucleatum-high colorectal cancers gradually increased from rectal cancers (2.5%; 4/157) to cecal cancers (11%; 19/178), with a statistically significant linear trend along all subsites (P<0.0001) and little evidence of non-linearity. The proportion ofF. nucleatum-low cancers was higher in rectal, ascending colon, and cecal cancers than in cancers of middle segments. CONCLUSIONS: The proportion ofF. nucleatum-high colorectal cancers gradually increases from rectum to cecum. Our data support the colorectal continuum model that reflects pathogenic influences of the gut microbiota on neoplastic and immune cells and challenges the prevailing two-colon (proximal vs. distal) dichotomy paradigm....

1 March 2018 in JAMA Oncology
Verified
Journal Article
Open access
PDF file
ZQZhi Rong Qian
Zhi Rong Qian
DRDouglas A. Rubinson
Douglas A. Rubinson
JNJonathan A. Nowak
Jonathan A. Nowak
VMVicente Morales-Oyarvide
Vicente Morales-Oyarvide
RDRichard F. Dunne
Richard F. Dunne
BWBrian M. Wolpin
Brian M. Wolpin
Pancreatic cancer is the third leading cause of cancer-related death in the United States.1 Large-scale genome sequencing studies have identified multiple molecular pathways involved in pancreatic adenocarcinoma initiation and progression.2-4 Four main driver genes have been identified—KRAS (NCBI 3845), CDKN2A (NCBI 1029), SMAD4 (NCBI 4089), and TP53 (NCBI 7157)—that are critical for pancreatic cancer growth. The association of these driver gene alterations with patient outcomes has not been clearly established. Therefore, we characterized the status of these 4 driver genes using immunohistochemistry (IHC) and next-generation sequencing (NGS) of DNA in a large, highly annotated, multi-institutional patient population with resected pancreatic adenocarcinoma.

5 May 2016 in Gut
Verified
Journal Article
Closed access
PDF file
YMYohei Masugi
Yohei Masugi
RNReiko Nishihara
Reiko Nishihara
JYJuhong Yang
Juhong Yang
KMKosuke Mima
Kosuke Mima
ASAnnacarolina da Silva
Annacarolina da Silva
Shuji OginoShuji Ogino
Shuji Ogino
Objective: Evidence suggests that CD274 (programmed death-ligand 1, B7-H1) immune checkpoint ligand repress antitumour immunity through its interaction with the PDCD1 (programmed cell death 1, PD-1) receptor of T lymphocytes in various tumours. We hypothesised that tumour CD274 expression levels might be inversely associated with T-cell densities in colorectal carcinoma tissue. Design: We evaluated tumour CD274 expression by immunohistochemistry in 823 rectal and colon cancer cases within the Nurses' Health Study and Health Professionals Follow-up Study. We conducted multivariable ordinal logistic regression analyses to examine the association of tumour CD274 expression with CD3+, CD8+, CD45RO (PTPRC)+ or FOXP3+ cell density in tumour tissue, controlling for potential confounders including tumour status of microsatellite instability (MSI), CpG island methylator phenotype, long interspersed nucleotide element-1 methylation level and KRAS, BRAF and PIK3CA mutations. Results: CD274 expression in tumour cells or stromal cells (including immune cells) was detected in 731 (89%) or 44 (5%) cases, respectively. Tumour CD274 expression level correlated inversely with FOXP3+ cell density in colorectal cancer tissue (outcome) (ptrend=0.0002). For a unit increase in outcome quartile categories, multivariable OR in the highest (vs lowest) CD274 expression score was 0.22 (95% CI 0.10 to 0.47). Tumour CD274 expression was inversely associated with MSI-high status (p=0.001). CD274 expression was not significantly associated with CD3+, CD8+ or CD45RO+ cell density, pathological lymphocytic reactions or patient survival prognosis. Conclusions: Tumour CD274 expression is inversely associated with FOXP3+ cell density in colorectal cancer tissue, suggesting a possible influence of CD274-expressing carcinoma cells on regulatory T cells in the tumour microenvironment.

1 June 2017 in Gastroenterology
Verified
Journal Article
Closed access
RMRaaj S. Mehta
Raaj S. Mehta
MSMingyang Song
Mingyang Song
RNReiko Nishihara
Reiko Nishihara
DDDavid A. Drew
David A. Drew
KWKana Wu
Kana Wu
ACAndrew T. Chan
Andrew T. Chan

1 June 2017 in Journal of Clinical Oncology
Verified
Journal Article
Closed access
THTsuyoshi Hamada
Tsuyoshi Hamada
YCYin Cao
Yin Cao
ZQZhi Rong Qian
Zhi Rong Qian
YMYohei Masugi
Yohei Masugi
JNJonathan A. Nowak
Jonathan A. Nowak
Shuji OginoShuji Ogino
Shuji Ogino
Purpose: Blockade of the programmed cell death 1 (PDCD1, PD-1) immune checkpoint pathway can improve clinical outcomes in various malignancies. Evidence suggests that aspirin (a widely used nonsteroidal anti-inflammatory drug) not only prolongs colorectal cancer survival, but can also activate T cell–mediated antitumor immunity and synergize with immunotherapy through inhibition of prostaglandin E2 production. We hypothesized that the survival benefit associated with aspirin might be stronger in colorectal carcinoma with a lower CD274 (PDCD1 ligand 1, PD-L1) expression level that resulted in lower signaling of the immune checkpoint pathway. Patients and Methods: Using data from 617 patients with rectal and colon cancer in the Nurses’ Health Study and the Health Professionals Follow-Up Study, we examined the association of postdiagnosis aspirin use with patient survival in strata of tumor CD274 expression status measured by immunohistochemistry. We used multivariable Cox proportional hazards regression models to control for potential confounders, including disease stage, microsatellite instability status, CpG island methylator phenotype, long interspersed nucleotide element-1 methylation, cyclooxygenase-2 (PTGS2), and CDX2 expression, and KRAS, BRAF, and PIK3CA mutations. Results: The association of postdiagnosis aspirin use with colorectal cancer–specific survival differed by CD274 expression status ( Pinteraction < .001); compared with aspirin nonusers; multivariable-adjusted hazard ratios for regular aspirin users were 0.16 (95% CI, 0.06 to 0.41) in patients with low CD274 and 1.01 (95% CI, 0.61 to 1.67) in patients with high CD274. This differential association seemed consistent in patients with microsatellite-stable or PIK3CA wild-type disease and in strata of PTGS2 expression, CDX2 expression, tumor-infiltrating lymphocytes, or prediagnosis aspirin use status. Conclusion: The association of aspirin use with colorectal cancer survival is stronger in patients with CD274-low tumors than CD274-high tumors. Our findings suggest a differential antitumor effect of aspirin according to immune checkpoint status.

1 December 2017 in Gastroenterology
Verified
Journal Article
Closed access
LLLi Liu
Li Liu
RNReiko Nishihara
Reiko Nishihara
ZQZhi Rong Qian
Zhi Rong Qian
FTFred K. Tabung
Fred K. Tabung
DNDaniel Nevo
Daniel Nevo
Shuji OginoShuji Ogino
Shuji Ogino