Malaysia is considered as a major palm oil producer in the world. Therefore, it is vital to utilize an environmentally friendly and inexpensive method to treat palm oil mill effluent (POME) in Malaysia. Nowadays, the use of microalgae to remove pollutants from POME has gained a lot of attention. The main objective of this research was to investigate the effect of POME as a nutrient on the microalgae growth and analyze the removal rate of pollution. In this study, a pure culture Chlamydomonas incerta was aseptically transferred to an Erlenmeyer flask containing POME. The effect of POME as a high nutritional substrate, different cultivation scales, carbon total nitrogen (C:TN) ratio, and the lipid productivity of microalgae C. incerta were assessed. C. incerta was grown at room temperature under continuous illumination with the intensity of ± 15 (μmol/m2/s) for 28 days, followed by the measurement of chemical oxygen demand (COD) reduction at different substrate concentrations. The results of this study demonstrated that organic carbon was removed by C. incerta for the ratio of 100:7, 100:13, and 100:31 respectively within the second day of cultivation. Fast growth of microalgae was observed in organic and inorganic substrates for adoption within the second day of experiment. The optimum achievement rate of nutrient removal with C. incerta was about 67.35% of COD for 250mg/L of POME concentrations in 28 days. The significance of this study is regarding the introduction of a new microalgae strain with a high ability to remove nutrients from POME, which can contribute to the effort in finding an efficient and economic technology for improving our environment