Karina Vilches

Dr. Karina Vilches

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
19 April 2023 in Artificial Intelligence Review
Verified
Journal Article
Closed access
PDF file
JVJosé Angel Vásquez
José Angel Vásquez
MMMarco Mora
Marco Mora
KVKarina Vilches
Karina Vilches

29 July 2023 in Neurocomputing
Verified
Journal Article
Closed access
YHYoleidy Huérfano-Maldonado
Yoleidy Huérfano-Maldonado
MMMarco Mora
Marco Mora
KVKarina Vilches
Karina Vilches
Ruber Hernández-GarcíaRuber Hernández-García
Ruber Hernández-García
RGRodrigo Gutiérrez
Rodrigo Gutiérrez
MVMiguel Vera
Miguel Vera

6 August 2019 in Journal of Mathematical Biology
Verified
Journal Article
Closed access
PDF file
EEElio Espejo
Elio Espejo
KVKarina Vilches
Karina Vilches
CCCarlos Conca
Carlos Conca

Verified
Journal Article
Open access
PDF file
EGElkin Gelvez-Almeida
Elkin Gelvez-Almeida
MMMarco Mora
Marco Mora
Ricardo J. BarrientosRicardo J. Barrientos
Ricardo J. Barrientos
Ruber Hernández-GarcíaRuber Hernández-García
Ruber Hernández-García
KVKarina Vilches
Karina Vilches
MVMiguel Angel Vera
Miguel Angel Vera
The randomization-based feedforward neural network has raised great interest in the scientific community due to its simplicity, training speed, and accuracy comparable to traditional learning algorithms. The basic algorithm consists of randomly determining the weights and biases of the hidden layer and analytically calculating the weights of the output layer by solving a linear overdetermined system using the Moore–Penrose generalized inverse. When processing large volumes of data, randomization-based feedforward neural network models consume large amounts of memory and drastically increase training time. To efficiently solve the above problems, parallel and distributed models have recently been proposed. Previous reviews of randomization-based feedforward neural network models have mainly focused on categorizing and describing the evolution of the algorithms presented in the literature. The main contribution of this paper is to approach the topic from the perspective of the handling of large volumes of data. In this sense, we present a current and extensive review of the parallel and distributed models of randomized feedforward neural networks, focusing on extreme learning machine. In particular, we review the mathematical foundations (Moore–Penrose generalized inverse and solution of linear systems using parallel and distributed methods) and hardware and software technologies considered in current implementations.

4 March 2025 in Briefings in Bioinformatics
Verified
Journal Article
Open access
JHJair Herazo-Álvarez
Jair Herazo-Álvarez
MMMarco Mora
Marco Mora
SCSara Cuadros-Orellana
Sara Cuadros-Orellana
KVKarina Vilches
Karina Vilches
Ruber Hernández-GarcíaRuber Hernández-García
Ruber Hernández-García
One of the main goals of metagenomic studies is to describe the taxonomic diversity of microbial communities. A crucial step in metagenomic analysis is metagenomic binning, which involves the (supervised) classification or (unsupervised) clustering of metagenomic sequences. Various machine learning models have been applied to address this task. In this review, the contributions of artificial neural networks (ANN) in the context of metagenomic binning are detailed, addressing both supervised, unsupervised, and semi-supervised approaches. 34 ANN-based binning tools are systematically compared, detailing their architectures, input features, datasets, advantages, disadvantages, and other relevant aspects. The findings reveal that deep learning approaches, such as convolutional neural networks and autoencoders, achieve higher accuracy and scalability than traditional methods. Gaps in benchmarking practices are highlighted, and future directions are proposed, including standardized datasets and optimization of architectures, for third-generation sequencing. This review provides support to researchers in identifying trends and selecting suitable tools for the metagenomic binning problem.

29 September 2023 in Plants
Verified
Journal Article
Open access
PDF file
JGJuan Pablo Gutiérrez-Jara
Juan Pablo Gutiérrez-Jara
KVKatia Vogt-Geisse
Katia Vogt-Geisse
MCMargarita Correa
Margarita Correa
KVKarina Vilches
Karina Vilches
LPLaura Pérez
Laura Pérez
Gerardo ChowellGerardo Chowell
Gerardo Chowell
Sharka is a disease affecting stone fruit trees. It is caused by the Plum pox virus (PPV), with Myzus persicae being one of the most efficient aphid species in transmitting it within and among Prunus orchards. Other agricultural management strategies are also responsible for the spread of disease among trees, such as grafting and pruning. We present a mathematical model of impulsive differential equations to represent the dynamics of Sharka disease in the tree and vector population. We consider three transmission routes: grafting, pruning, and through aphid vectors. Grafting, pruning, and vector control occur as pulses at specific instants. Within the model, human risk perception towards disease influences these agricultural management strategies. Model results show that grafting with infected biological material has a significant impact on the spread of the disease. In addition, detecting infectious symptomatic and asymptomatic trees in the short term is critical to reduce disease spread. Furthermore, vector control to prevent aphid movement between trees is crucial for disease mitigation, as well as implementing awareness campaigns for Sharka disease in agricultural communities that provide a long-term impact on responsible pruning, grafting, and vector control.