Proliferations of the benthic anatoxin-producing cyanobacterium Phormidium are increasing in prevalence in cobble-bed rivers worldwide. This proliferation is of particular concern when rivers are used as sources of drinking water or for recreation. Little is known about the physicochemical variables promoting proliferations, and our existing knowledge is based on data from only a few rivers. We assessed Phormidium cover, physicochemical variables, and anatoxin concentrations at 10 sites in 7 New Zealand rivers every week for 2 y. Generalized additive mixed models (GAMMs) identified dissolved inorganic N (DIN) over the accrual period <0.8 mg/L, dissolved reactive P accrual 15°C, and conductivity as having positive and statistically significant effects on % Phormidium cover. Flow intensity, expressed relative to the long-term median, had a positive effect up to 0.4× the median flow and a negative effect when >0.5× the median flow. Quantile regression models showed marked variability among sites in relation to the flow intensity required to reduce % Phormidium cover (90^th percentile ranged 0.65–249× the long-term median flow). Anatoxins were detected in variable concentrations in samples from 7 of the 10 sites. GAMMs identified strong relationships between elevated toxin concentrations and low conductivity and increasing % Phormidium cover, and significantly lower toxin concentrations when DIN was <0.2 mg/L. These data demonstrate that multiple physicochemical variables influence Phormidium proliferations and toxin concentrations and indicate that the relative importance of these variables differs among rivers and sites.

The effects of coastal floodgates on fish distribution are largely unknown. In this study, we used Dual‐frequency Identification Sonar (DIDSON) to assess the effect of tidal floodgates on movement of diadromous juvenile galaxiids in a New Zealand estuarine system and test the suitability of DIDSON as a tool for monitoring behaviour of small fish. DIDSON allowed observations of juvenile galaxiid movements over 24 h through contrasting gated and un‐gated culverts. More than twice as many fish were recorded passing the un‐gated culvert than the gated culvert. Movement occurred during the day and night and was highest at the un‐gated culvert just before high tide. By contrast, movement past the gated culvert was highest during low tide, when the gate was open. DIDSON is suitable for discretely observing in situ behaviour of small fish at night or in turbid water and will assist to identify design and operational needs for fish‐friendly floodgates.

Alteration of urban streams by culverts is common throughout the world and is known to impede freshwater fish movement. The main objectives were therefore to investigate how different culvert characteristics (e.g. height, length, angle, perched v. non-perched) and habitat variables (e.g. water velocity, riverbed gradient) affect the passage success of juvenile inanga (Galaxias maculatus), a weak-swimming migratory fish. We determined whether passage of juvenile G. maculatus could be improved by installing a ramp at thirteen replicate in situ culverts in Nelson City, New Zealand. As expected, none of the 400 fish tested were able to pass undercut (i.e. perched) culverts before ramp installation (0% passage), compared with the 250 fish (65% passage) that were able to pass non-perched culverts. Significantly more fish (44% passage) reached perched culvert outlets when aided by the ramp. Passage success with the ramp depended on its length and angle, with fewer fish passing longer or steeper ramps. To provide upstream passage for weak-swimming species such as juvenile (fork length < 60 mm) G. maculatus, ramp length and angle should not exceed three metres and 20 degrees, respectively. With passage requirements known and mitigation processes in place, urban fish populations might be able to be sustained.

Stream metabolism (gross primary production and ecosystem respiration) is increasingly used to assess waterway health because mean values are responsive to spatial variation in land use, but little is known about how human land use influences the temporal variability of stream metabolism. We investigated daily variation in dissolved O₂ (DO) concentrations and calculated mean and within-season variation in gross primary production (GPP) and ecosystem respiration (ER) rates at 13 stream sites across a landuse intensity gradient in the Auckland region, New Zealand, over 9 y. Based on generalized linear mixed models, mean daily GPP (0.1–12.6 g O₂ m⁻² d⁻¹) and ER (1.8–29.6 g O₂ m⁻² d⁻¹) and seasonal variation in stream metabolism were significantly related to landuse intensity with higher variability associated with higher values of a landuse stress score. Overall, mean daily rates and day-to-day variation in GPP and ER were greatest in summer and least in winter. We recommend summer monitoring over a minimum 5-d period to assess stream health. Our results show that human land use affects the mean and the temporal variability of DO and stream metabolism. This finding has important consequences for characterizing in-stream processes and the resilience of stream ecosystems. Only long-term temporal monitoring provides the data needed to assess fully how streams function.

The mitigating effects of fish passes to aid fish dispersal are well recognised; however, non‐sports fish species, juveniles and weak swimmers have mostly been neglected when developing solutions to fish passage issues. We studied the juvenile (fork length, FL <60 mm) swimming ability of a weakly swimming fish species, īnanga ( Galaxias maculatus ), up an artificial ramp to evaluate the effects of fish size, ramp slope (5°, 15°, 25°), water velocity and the potential need for resting opportunities (pools) for a successful ascent. Water velocity significantly increased and fish passage success significantly decreased with ramp angle, with only one fish passing the 25° ramp. On average, fish had to be 10 mm larger to ascend a 15° ramp angle than at 5°. Pools did not enhance passage success in this study. To facilitate fish passage at barriers for weakly swimming fish species like juvenile īnanga, ramps should provide a rough surface substrate and have an optimal angle of 5° for a 3‐m ramp.