Yeyin Shi

Dr. Yeyin Shi

Biological Systems Engineering, University of Nebraska-Lincoln, 3605 Fair Street, NE 68583, USA
orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
29 July 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
YSYeyin Shi
Yeyin Shi
JTJ. Alex Thomasson
J. Alex Thomasson
SMSeth C. Murray
Seth C. Murray
NPN. Ace Pugh
N. Ace Pugh
WRWilliam L. Rooney
William L. Rooney
CYChenghai Yang
Chenghai Yang
Advances in automation and data science have led agriculturists to seek real-time, high-quality, high-volume crop data to accelerate crop improvement through breeding and to optimize agronomic practices. Breeders have recently gained massive data-collection capability in genome sequencing of plants. Faster phenotypic trait data collection and analysis relative to genetic data leads to faster and better selections in crop improvement. Furthermore, faster and higher-resolution crop data collection leads to greater capability for scientists and growers to improve precision-agriculture practices on increasingly larger farms; e.g., site-specific application of water and nutrients. Unmanned aerial vehicles (UAVs) have recently gained traction as agricultural data collection systems. Using UAVs for agricultural remote sensing is an innovative technology that differs from traditional remote sensing in more ways than strictly higher-resolution images; it provides many new and unique possibilities, as well as new and unique challenges. Herein we report on processes and lessons learned from year 1—the summer 2015 and winter 2016 growing seasons–of a large multidisciplinary project evaluating UAV images across a range of breeding and agronomic research trials on a large research farm. Included are team and project planning, UAV and sensor selection and integration, and data collection and analysis workflow. The study involved many crops and both breeding plots and agronomic fields. The project’s goal was to develop methods for UAVs to collect high-quality, high-volume crop data with fast turnaround time to field scientists. The project included five teams: Administration, Flight Operations, Sensors, Data Management, and Field Research. Four case studies involving multiple crops in breeding and agronomic applications add practical descriptive detail. Lessons learned include critical information on sensors, air vehicles, and configuration parameters for both. As the first and most comprehensive project of its kind to date, these lessons are particularly salient to researchers embarking on agricultural research with UAVs.

3 July 2020 in Remote Sensing
Verified
Journal Article
Open access
PDF file
ASArun Narenthiran Veeranampalayam Sivakumar
Arun Narenthiran Veeranampalayam Sivakumar
Jiating LiJiating Li
Jiating Li
SSStephen Scott
Stephen Scott
EPEric Psota
Eric Psota
AJAmit J. Jhala
Amit J. Jhala
YSYeyin Shi
Yeyin Shi
Mid- to late-season weeds that escape from the routine early-season weed management threaten agricultural production by creating a large number of seeds for several future growing seasons. Rapid and accurate detection of weed patches in field is the first step of site-specific weed management. In this study, object detection-based convolutional neural network models were trained and evaluated over low-altitude unmanned aerial vehicle (UAV) imagery for mid- to late-season weed detection in soybean fields. The performance of two object detection models, Faster RCNN and the Single Shot Detector (SSD), were evaluated and compared in terms of weed detection performance using mean Intersection over Union (IoU) and inference speed. It was found that the Faster RCNN model with 200 box proposals had similar good weed detection performance to the SSD model in terms of precision, recall, f1 score, and IoU, as well as a similar inference time. The precision, recall, f1 score and IoU were 0.65, 0.68, 0.66 and 0.85 for Faster RCNN with 200 proposals, and 0.66, 0.68, 0.67 and 0.84 for SSD, respectively. However, the optimal confidence threshold of the SSD model was found to be much lower than that of the Faster RCNN model, which indicated that SSD might have lower generalization performance than Faster RCNN for mid- to late-season weed detection in soybean fields using UAV imagery. The performance of the object detection model was also compared with patch-based CNN model. The Faster RCNN model yielded a better weed detection performance than the patch-based CNN with and without overlap. The inference time of Faster RCNN was similar to patch-based CNN without overlap, but significantly less than patch-based CNN with overlap. Hence, Faster RCNN was found to be the best model in terms of weed detection performance and inference time among the different models compared in this study. This work is important in understanding the potential and identifying the algorithms for an on-farm, near real-time weed detection and management.

29 May 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Ana I. De CastroAna I. De Castro
Ana I. De Castro
YSYeyin Shi
Yeyin Shi
Joe Mari MajaJoe Mari Maja
Joe Mari Maja
José M. PeñaJosé M. Peña
José M. Peña
This paper reviewed a set of twenty-one original and innovative papers included in a special issue on UAVs for vegetation monitoring, which proposed new methods and techniques applied to diverse agricultural and forestry scenarios. Three general categories were considered: (1) sensors and vegetation indices used, (2) technological goals pursued, and (3) agroforestry applications. Some investigations focused on issues related to UAV flight operations, spatial resolution requirements, and computation and data analytics, while others studied the ability of UAVs for characterizing relevant vegetation features (mainly canopy cover and crop height) or for detecting different plant/crop stressors, such as nutrient content/deficiencies, water needs, weeds, and diseases. The general goal was proposing UAV-based technological solutions for a better use of agricultural and forestry resources and more efficient production with relevant economic and environmental benefits.

30 December 2024 in Global Change Biology
Verified
Journal Article
Open access
LLLIDONG LI
LIDONG LI
TATala Awada
Tala Awada
YSYeyin Shi
Yeyin Shi
Virginia JinVirginia Jin
Virginia Jin
MKMichael Kaiser
Michael Kaiser
Agriculture serves as both a source and a sink of global greenhouse gases (GHGs), with agricultural intensification continuing to contribute to GHG emissions. Climate‐smart agriculture, encompassing both nature‐ and technology‐based actions, offers promising solutions to mitigate GHG emissions. We synthesized global data, between 1990 and 2021, from the Food and Agriculture Organization (FAO) of the United Nations to analyze the impacts of agricultural activities on global GHG emissions from agricultural land, using structural equation modeling. We then obtained predictive estimates of agricultural GHG emissions for the future period of 2022–2050 using deep‐learning models. The FAO data show that, from 1990 to 2021, global livestock numbers, inorganic nitrogen (N) fertilizer use, crop residue, and irrigation area increased by 27%, 47%, 49%, and 37%, respectively. The increased livestock numbers contributed to the increases in CH4 and N2O emissions, while inorganic N fertilizer, crop residue, and irrigation mainly contributed to the increases in N2O emissions. Emissions of CO2 decreased because of a 29% reduction in net forest loss. As a result of the reduced deforestation emissions, the overall agricultural GHG emissions declined from 11.50 to 10.89 GtCO2eq from 1990 to 2021 despite the increases in livestock numbers, inorganic N fertilizer, crop residue, and irrigation. Looking ahead, our model predicts that if current agricultural trends persist, GHG emissions will rise to 11.82 ± 0.07 GtCO2eq in 2050. However, maintaining agricultural GHG emissions at the 2021 level through 2050 is possible if the rate of reduction in net forest loss is doubled. Furthermore, if the rate is tripled, agricultural GHG emissions can be limited to 9.85 ± 0.07 GtCO2eq in 2050. Our findings suggest that reductions in agricultural GHG emissions, alongside sustainable agricultural intensification and climate‐smart agricultural practices, can be achieved through parallel efforts emphasizing accelerated forest conservation.

2 November 2018 in Sensors
Verified
Journal Article
Open access
PDF file
WYWenan Yuan
Wenan Yuan
Jiating LiJiating Li
Jiating Li
MBMadhav Bhatta
Madhav Bhatta
YSYeyin Shi
Yeyin Shi
PBPeter Stephen Baenziger
Peter Stephen Baenziger
Yufeng GeYufeng Ge
Yufeng Ge
As one of the key crop traits, plant height is traditionally evaluated manually, which can be slow, laborious and prone to error. Rapid development of remote and proximal sensing technologies in recent years allows plant height to be estimated in more objective and efficient fashions, while research regarding direct comparisons between different height measurement methods seems to be lagging. In this study, a ground-based multi-sensor phenotyping system equipped with ultrasonic sensors and light detection and ranging (LiDAR) was developed. Canopy heights of 100 wheat plots were estimated five times during a season by the ground phenotyping system and an unmanned aircraft system (UAS), and the results were compared to manual measurements. Overall, LiDAR provided the best results, with a root-mean-square error (RMSE) of 0.05 m and an R2 of 0.97. UAS obtained reasonable results with an RMSE of 0.09 m and an R2 of 0.91. Ultrasonic sensors did not perform well due to our static measurement style. In conclusion, we suggest LiDAR and UAS are reliable alternative methods for wheat height evaluation.

12 February 2018 in Scientific Reports
Verified
Journal Article
Open access
PDF file
JLJinzhu Lu
Jinzhu Lu
REReza Ehsani
Reza Ehsani
YSYeyin Shi
Yeyin Shi
ACAna Isabel de Castro
Ana Isabel de Castro
SWShuang Wang
Shuang Wang
Several diseases have threatened tomato production in Florida, resulting in large losses, especially in fresh markets. In this study, a high-resolution portable spectral sensor was used to investigate the feasibility of detecting multi-diseased tomato leaves in different stages, including early or asymptomatic stages. One healthy leaf and three diseased tomato leaves (late blight,targetandbacterial spots) were defined into four stages (healthy, asymptomatic, early stage and late stage) and collected from a field. Fifty-seven spectral vegetation indices (SVIs) were calculated in accordance with methods published in previous studies and established in this study. Principal component analysis was conducted to evaluate SVIs. Results revealed six principal components (PCs) whose eigenvalues were greater than 1. SVIs with weight coefficients ranking from 1 to 30 in each selected PC were applied to aK-nearest neighbour for classification. Amongst the examined leaves, the healthy ones had the highest accuracy (100%) and the lowest error rate (0) because of their uniform tissues. Late stage leaves could be distinguished more easily than the two other disease categories caused by similar symptoms on the multi-diseased leaves. Further work may incorporate the proposed technique into an image system that can be operated to monitor multi-diseased tomato plants in fields.