Yu Ding

Yu Ding


Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2010 in The Plant Cell
Verified
Journal Article
Open access
PDF file
JWJuan Wang
Juan Wang
YDYu Ding
Yu Ding
JWJunqi Wang
Junqi Wang
SHStefan Hillmer
Stefan Hillmer
YMYansong Miao
Yansong Miao
LJLiwen Jiang
Liwen Jiang
The exocyst protein complex mediates vesicle fusion with the plasma membrane. By expressing an (X)FP-tagged Arabidopsis thaliana homolog of the exocyst protein Exo70 in suspension-cultured Arabidopsis and tobacco (Nicotiana tabacum) BY-2 cells, and using antibodies specific for Exo70, we detected a compartment, which we term EXPO (for exocyst positive organelles). Standard markers for the Golgi apparatus, the trans-Golgi network/early endosome, and the multivesicular body/late endosome in plants do not colocalize with EXPO. Inhibitors of the secretory and endocytic pathways also do not affect EXPO. Exo70E2-(X)FP also locates to the plasma membrane (PM) as discrete punctae and is secreted outside of the cells. Immunogold labeling of sections cut from high-pressure frozen samples reveal EXPO to be spherical double membrane structures resembling autophagosomes. However, unlike autophagosomes, EXPOs are not induced by starvation and do not fuse with the lytic compartment or with endosomes. Instead, they fuse with the PM, releasing a single membrane vesicle into the cell wall. EXPOs are also found in other cell types, including root tips, root hair cells, and pollen grains. EXPOs therefore represent a form of unconventional secretion unique to plants.

1 May 2021 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
FLFan Li
Fan Li
QYQinghua Ye
Qinghua Ye
MCMoutong Chen
Moutong Chen
BZBaoqing Zhou
Baoqing Zhou
JZJumei Zhang
Jumei Zhang
QWQingping Wu
Qingping Wu

13 May 2014 in The Plant Cell
Verified
Journal Article
Open access
PDF file
YCYong Cui
Yong Cui
QZQiong Zhao
Qiong Zhao
CGCaiji Gao
Caiji Gao
YDYu Ding
Yu Ding
YZYonglun Zeng
Yonglun Zeng
LJLiwen Jiang
Liwen Jiang
Rab GTPases serve as multifaceted organizers during vesicle trafficking. Rab7, a member of the Rab GTPase family, has been shown to perform various essential functions in endosome trafficking and in endosome-to-lysosome trafficking in mammalian systems. The Arabidopsis thaliana genome encodes eight putative Rab7 homologs; however, the detailed function and activation mechanism of Rab7 in plants remain unknown. Here, we demonstrate that Arabidopsis RABG3f, a member of the plant Rab7 small GTPase family, localizes to prevacuolar compartments (PVCs) and the tonoplast. The proper activation of Rab7 is essential for both PVC-to-vacuole trafficking and vacuole biogenesis. Expression of a dominant-negative Rab7 mutant (RABG3fT22N) induces the formation of enlarged PVCs and affects vacuole morphology in plant cells. We also identify Arabidopsis MON1 (MONENSIN SENSITIVITY1) and CCZ1 (CALCIUM CAFFEINE ZINC SENSITIVITY1) proteins as a dimeric complex that functions as the Rab7 guanine nucleotide exchange factor. The MON1-CCZ1 complex also serves as the Rab5 effector to mediate Rab5-to-Rab7 conversion on PVCs. Loss of functional MON1 causes the formation of enlarged Rab5-positive PVCs that are separated from Rab7-positive endosomes. Similar to the dominant-negative Rab7 mutant, the mon1 mutants show pleiotropic growth defects, fragmented vacuoles, and altered vacuolar trafficking. Thus, Rab7 activation by the MON1-CCZ1 complex is critical for vacuolar trafficking, vacuole biogenesis, and plant growth.

20 January 2022 in Nutrients
Verified
Journal Article
Open access
PDF file
SWsj wu
sj wu
ZBZuhaib F. Bhat
Zuhaib F. Bhat
RGRochelle S. Gounder
Rochelle S. Gounder
IAIsam Ahmed
Isam Ahmed
FAFahad Y AL-Juhaimi
Fahad Y AL-Juhaimi
Alaa El-Din BekhitAlaa El-Din Bekhit
Alaa El-Din Bekhit
The effect of diet on the composition of gut microbiota and the consequent impact on disease risk have been of expanding interest. The present review focuses on current insights of changes associated with dietary protein-induced gut microbial populations and examines their potential roles in the metabolism, health, and disease of animals. Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) protocol was used, and 29 highly relevant articles were obtained, which included 6 mouse studies, 7 pig studies, 15 rat studies, and 1 in vitro study. Analysis of these studies indicated that several factors, such as protein source, protein content, dietary composition (such as carbohydrate content), glycation of protein, processing factors, and protein oxidation, affect the digestibility and bioavailability of dietary proteins. These factors can influence protein fermentation, absorption, and functional properties in the gut and, consequently, impact the composition of gut microbiota and affect human health. While gut microbiota can release metabolites that can affect host physiology either positively or negatively, the selection of quality of protein and suitable food processing conditions are important to have a positive effect of dietary protein on gut microbiota and human health.

17 December 2018 in Nature Plants
Verified
Journal Article
Closed access
YCYong Cui
Yong Cui
WCWenhan Cao
Wenhan Cao
YHYilin He
Yilin He
QZQiong Zhao
Qiong Zhao
MWMayumi Wakazaki
Mayumi Wakazaki
LJLiwen Jiang
Liwen Jiang

15 January 2020 in Frontiers in Microbiology
Verified
Journal Article
Open access
SYShubo Yu
Shubo Yu
PYPengfei Yu
Pengfei Yu
JWJuan Wang
Juan Wang
CLChun Li
Chun Li
HGHui Guo
Hui Guo
YDYu Ding
Yu Ding
Bacillus cereus is widely distributed in different food products and can cause a variety of symptoms associated with food poisoning. Since ready-to-eat (RTE) foods are not commonly sterilized by heat treatment before consumption, B. cereus contamination may cause severe food safety problems. In this study, we investigated the prevalence of B. cereus in RTE food samples from different regions of China and evaluated the levels of bacterial contamination, antibiotic resistance, virulence gene distribution, and genetic polymorphisms of these isolates. Of the tested retail RTE foods, 35% were positive for B. cereus, with 39 and 83% of the isolated strains harboring the enterotoxin-encoding hblACD and nheABC gene clusters, respectively. The entFM gene was detected in all B. cereus strains. The cytK gene was present in 68% of isolates, but only 7% harbored the emetic toxin-encoding gene cesB. Antimicrobial susceptibility testing revealed that the majority of the isolates were resistant not only to most β-lactam antibiotics, but also to rifamycin. Multilocus sequence typing (MLST) revealed that the 368 isolates belonged to 192 different sequence types (STs) including 93 new STs, the most prevalent of which was ST26. Collectively, our study indicates the prevalence, bacterial contamination levels, and biological characteristics of B. cereus isolated from RTE foods in China and demonstrates the potential hazards of B. cereus in RTE foods.