Naoki Kabeya

Dr. Naoki Kabeya

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 May 2018 in Science Advances
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Journal Article
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NKNaoki Kabeya
Naoki Kabeya
MFMiguel M. Fonseca
Miguel M. Fonseca
DFDavid Ferrier
David Ferrier
JNJuan Carlos Navarro
Juan Carlos Navarro
LBLine Bay
Line Bay
Óscar MonroigÓscar Monroig
Óscar Monroig
Multiple invertebrates possess enzymes enabling de novo biosynthesis of essential omega-3 fatty acids.

8 September 2018 in Fisheries Science
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Óscar MonroigÓscar Monroig
Óscar Monroig
NKNaoki Kabeya
Naoki Kabeya
Invertebrates represent a large proportion of the biomass in aquatic ecosystems, particularly in the ocean. In recent years, invertebrates have been well-consolidated models in evolutionary developmental biology research and, consequently, genomic and transcriptomic sequence databases from a plethora of species across the animal kingdom have become available. This has provided an excellent source of evidence confirming that invertebrates operate endogenous mechanisms for PUFA production. The present paper reviews the current knowledge of gene complement and, where possible, the function of desaturases and elongases with pivotal roles in PUFA biosynthesis of aquatic invertebrates. More specifically, this review covers three major enzyme types, namely ωx desaturases, front-end desaturases and elongases, that have been characterised from species of sponges, cnidarians, molluscs, annelids, crustaceans, rotifers, echinoderms and non-vertebrate chordates (amphioxus and sea squirt). These studies have shown that invertebrates operate alternative and unusual pathways of PUFA biosynthesis involving gene families with complex phylogeny and functional diversity. Consequently, research in this area provides potentially valuable molecular tools in the form of genes that can be used in the biotechnological production of n-3 products.

31 May 2019 in Science
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Journal Article
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AIAsano Ishikawa
Asano Ishikawa
NKNaoki Kabeya
Naoki Kabeya
KIKoki Ikeya
Koki Ikeya
RKRyo Kakioka
Ryo Kakioka
JCJennifer N. Cech
Jennifer N. Cech
JKJun Kitano
Jun Kitano
Well prepared: It is well known that species radiate into new niches by adapting to novel environments. But why do some species radiate in this way, while other, related, species do not. Ishikawa et al. looked across sticklebacks to determine why some, originally marine, lineages were able to colonize postglacial freshwater environments (see the Perspective by Weber and Tong). They found that a gene involved in fatty acid desaturation was duplicated in freshwater lineages. Transgenic manipulation of this gene allowed marine lineages to synthesize fatty acids and thus survive on fatty acid–deficient freshwater diets. Science , this issue p. 886 ; see also p. 831

20 June 2017 in Scientific Reports
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AOAngela Oboh
Angela Oboh
NKNaoki Kabeya
Naoki Kabeya
GCGreta Carmona-Antoñanzas
Greta Carmona-Antoñanzas
FCFilipe Castro
Filipe Castro
JDJames R. Dick
James R. Dick
Óscar MonroigÓscar Monroig
Óscar Monroig
Docosahexaenoic acid (DHA) plays important physiological roles in vertebrates. Studies in rats and rainbow trout confirmed that DHA biosynthesis proceeds through the so-called “Sprecher pathway”, a biosynthetic process requiring a Δ6 desaturation of 24:5n−3 to 24:6n−3. Alternatively, some teleosts possess fatty acyl desaturases 2 (Fads2) that enable them to biosynthesis DHA through a more direct route termed the “Δ4 pathway”. In order to elucidate the prevalence of both pathways among teleosts, we investigated the Δ6 ability towards C24 substrates of Fads2 from fish with different evolutionary and ecological backgrounds. Subsequently, we retrieved public databases to identify Fads2 containing the YXXN domain responsible for the Δ4 desaturase function, and consequently enabling these species to operate the Δ4 pathway. We demonstrated that, with the exception of Δ4 desaturases, fish Fads2 have the ability to operate as Δ6 desaturases towards C24 PUFA enabling them to synthesise DHA through the Sprecher pathway. Nevertheless, the Δ4 pathway represents an alternative route in some teleosts and we identified the presence of putative Δ4 Fads2 in a further 11 species and confirmed the function as Δ4 desaturases of Fads2 from medaka and Nile tilapia. Our results demonstrated that two alternative pathways for DHA biosynthesis exist in teleosts.

10 June 2021 in Ecology Letters
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CTCornelia W Twining
Cornelia W Twining
JBJoey R Bernhardt
Joey R Bernhardt
ADAlison M Derry
Alison M Derry
CHCameron M Hudson
Cameron M Hudson
AIAsano Ishikawa
Asano Ishikawa
BMBlake Matthews
Blake Matthews
The nutritional diversity of resources can affect the adaptive evolution of consumer metabolism and consumer diversification. The omega‐3 long‐chain polyunsaturated fatty acids eicosapentaenoic acid (EPA; 20:5n‐3) and docosahexaenoic acid (DHA; 22:6n‐3) have a high potential to affect consumer fitness, through their widespread effects on reproduction, growth and survival. However, few studies consider the evolution of fatty acid metabolism within an ecological context. In this review, we first document the extensive diversity in both primary producer and consumer fatty acid distributions amongst major ecosystems, between habitats and amongst species within habitats. We highlight some of the key nutritional contrasts that can shape behavioural and/or metabolic adaptation in consumers, discussing how consumers can evolve in response to the spatial, seasonal and community‐level variation of resource quality. We propose a hierarchical trait‐based approach for studying the evolution of consumers’ metabolic networks and review the evolutionary genetic mechanisms underpinning consumer adaptation to EPA and DHA distributions. In doing so, we consider how the metabolic traits of consumers are hierarchically structured, from cell membrane function to maternal investment, and have strongly environment‐dependent expression. Finally, we conclude with an outlook on how studying the metabolic adaptation of consumers within the context of nutritional landscapes can open up new opportunities for understanding evolutionary diversification.

1 May 2010 in Biology of Reproduction
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Journal Article
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RYRyosuke Yazawa
Ryosuke Yazawa
YTYutaka Takeuchi
Yutaka Takeuchi
KHKentaro Higuchi
Kentaro Higuchi
TYTakashi Yatabe
Takashi Yatabe
NKNaoki Kabeya
Naoki Kabeya
GYGoro Yoshizaki
Goro Yoshizaki
The production of xenogenic gametes from large-bodied, commercially important marine fish species in closely related smaller host fish species with sh