Hiroki Shibata

Prof. Hiroki Shibata

orcid

Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 July 2018 in Scientific Reports
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HSHiroki Shibata
Hiroki Shibata
TCTakahito Chijiwa
Takahito Chijiwa
NONaoko Oda-Ueda
Naoko Oda-Ueda
HNHitomi Nakamura
Hitomi Nakamura
KYKazuaki Yamaguchi
Kazuaki Yamaguchi
Tomohisa OgawaTomohisa Ogawa
Tomohisa Ogawa
Evolution of novel traits is a challenging subject in biological research. Several snake lineages developed elaborate venom systems to deliver complex protein mixtures for prey capture. To understand mechanisms involved in snake venom evolution, we decoded here the ~1.4-Gb genome of a habu, Protobothrops flavoviridis. We identified 60 snake venom protein genes (SV) and 224 non-venom paralogs (NV), belonging to 18 gene families. Molecular phylogeny reveals early divergence of SV and NV genes, suggesting that one of the four copies generated through two rounds of whole-genome duplication was modified for use as a toxin. Among them, both SV and NV genes in four major components were extensively duplicated after their diversification, but accelerated evolution is evident exclusively in the SV genes. Both venom-related SV and NV genes are significantly enriched in microchromosomes. The present study thus provides a genetic background for evolution of snake venom composition.

1 May 2007 in Biochemical and Biophysical Research Communications
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TATakuro Arimura
Takuro Arimura
THTakeharu Hayashi
Takeharu Hayashi
YMYuji Matsumoto
Yuji Matsumoto
HSHiroki Shibata
Hiroki Shibata
SHShitoshi Hiroi
Shitoshi Hiroi
AKAkinori Kimura
Akinori Kimura

31 August 2005 in Behavioral and Brain Functions
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HLHee Jae Lee
Hee Jae Lee
JSJi Young Song
Ji Young Song
JKJong Woo Kim
Jong Woo Kim
SJSheng-Yu Jin
Sheng-Yu Jin
MHMi Suk Hong
Mi Suk Hong
YFYasuyuki Fukumaki
Yasuyuki Fukumaki
Background: The occurrence of aberrant functional connectivity in the neuronal circuit is one of the integrative theories of the etiology of schizophrenia. Previous studies have reported that the protein and mRNA levels of the synapsin 2 (SYN2) and complexin 2 (CPLX2) genes were decreased in patients with schizophrenia. Synapsin 2 and complexin 2 are involved in synaptogenesis and the modulation of neurotransmitter release. This report presents a study of the association of polymorphisms ofSYN2andCPLX2with schizophrenia in the Korean population.Methods: Six single nucleotide polymorphisms (SNPs) and one 5-bp insertion/deletion inSYN2and five SNPs inCPLX2were genotyped in 154 Korean patients with schizophrenia and 133 control patients using direct sequencing or restriction fragment length polymorphism analysis. An intermarker linkage disequilibrium map was constructed for each gene.Results: Although there was no significant difference in the genotypic distributions and allelic frequencies of eitherSYN2orCPLX2polymorphisms between the schizophrenia and control groups, the two-way haplotype analyses revealed significant associations with the disease (P< 0.05 after Bonferroni correction). The three-way haplotype analyses also revealed a significant association ofSYN2with schizophrenia (P< 0.001 after Bonferroni correction).Conclusion: These results suggest that bothSYN2andCPLX2may confer susceptibility to schizophrenia in the Korean population.

19 December 2002 in American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
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CMChieko Makino
Chieko Makino
YFYo Fujii
Yo Fujii
RKRumiko Kikuta
Rumiko Kikuta
NHNaotsugu Hirata
Naotsugu Hirata
ATAyako Tani
Ayako Tani
YFYasuyuki Fukumaki
Yasuyuki Fukumaki

6 August 2004 in BMC Psychiatry
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XDXiangdong Deng
Xiangdong Deng
HSHiroki Shibata
Hiroki Shibata
HNHideaki Ninomiya
Hideaki Ninomiya
NTNobutada Tashiro
Nobutada Tashiro
NINakao Iwata
Nakao Iwata
YFYasuyuki Fukumaki
Yasuyuki Fukumaki
Background: The glutamatergic dysfunction hypothesis of schizophrenia suggests that genes involved in glutametergic transmission are candidates for schizophrenic susceptibility genes. We have been performing systematic association studies of schizophrenia with the glutamate receptor and transporter genes. In this study we report an association study of the excitatory amino acid transporter 2 gene, SLC1A2 with schizophrenia. Methods: We genotyped 100 Japanese schizophrenics and 100 controls recruited from the Kyushu area for 11 single nucleotide polymorphism (SNP) markers distributed in the SLC1A2 region using the direct sequencing and pyrosequencing methods, and examined allele, genotype and haplotype association with schizophrenia.The positive finding observed in the Kyushu samples was re-examined using 100 Japanese schizophrenics and 100 controls recruited from the Aichi area. Results: We found significant differences in genotype and allele frequencies of SNP2 between cases and controls (P = 0.013 and 0.008, respectively). After Bonferroni corrections, the two significant differences disappeared. We tested haplotype associations for all possible combinations of SNP pairs. SNP2 showed significant haplotype associations with the disease (P = 9.4 × 10-5, P = 0.0052 with Bonferroni correction, at the lowest) in 8 combinations. Moreover, the significant haplotype association of SNP2-SNP7 was replicated in the cumulative analysis of our two sample sets. Conclusion: We concluded that at least one susceptibility locus for schizophrenia is probably located within or nearby SLC1A2 in the Japanese population.

1 May 2009 in Psychiatry Research
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HSHiroki Shibata
Hiroki Shibata
ATAyako Tani
Ayako Tani
TCTomoyuki Chikuhara
Tomoyuki Chikuhara
RKRumiko Kikuta
Rumiko Kikuta
MSMayumi Sakai
Mayumi Sakai
YFYasuyuki Fukumaki
Yasuyuki Fukumaki