Ivan Vikhlyantsev

Dr. Ivan Vikhlyantsev

Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences
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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 January 2019 in Bioscience Reports
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Elmira YakupovaElmira Yakupova
Elmira Yakupova
ABAlexander G Bobylev
Alexander G Bobylev
Ivan VikhlyantsevIvan Vikhlyantsev
Ivan Vikhlyantsev
ABAlexander G Bobylev
Alexander G Bobylev
Staining with Congo red (CR) is a qualitative method used for the identification of amyloids in vitro and in tissue sections. However, the drawbacks and artefacts obtained when using this dye can be found both in vitro and in vivo . Analysis of scientific data from previous studies shows that CR staining alone is not sufficient for confirmation of the amyloid nature of protein aggregates in vitro or for diagnosis of amyloidosis in tissue sections. In this paper, we describe the characteristics and limitations of other methods used for amyloid studies. Our historical review on the use of CR staining for amyloid studies may provide insight into the pitfalls and caveats related to this technique for researchers considering using this dye.

29 May 2017 in Biophysical Reviews
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Ivan VikhlyantsevIvan Vikhlyantsev
Ivan Vikhlyantsev
ZPZoya A. Podlubnaya
Zoya A. Podlubnaya

1 May 2021 in Biology
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Elmira YakupovaElmira Yakupova
Elmira Yakupova
LBLiya Bobyleva
Liya Bobyleva
SSSergey Shumeyko
Sergey Shumeyko
Ivan VikhlyantsevIvan Vikhlyantsev
Ivan Vikhlyantsev
ABAlexander G Bobylev
Alexander G Bobylev
Proteins can perform their specific function due to their molecular structure. Partial or complete unfolding of the polypeptide chain may lead to the misfolding and aggregation of proteins in turn, resulting in the formation of different structures such as amyloid aggregates. Amyloids are rigid protein aggregates with the cross-β structure, resistant to most solvents and proteases. Because of their resistance to proteolysis, amyloid aggregates formed in the organism accumulate in tissues, promoting the development of various diseases called amyloidosis, for instance Alzheimer’s diseases (AD). According to the main hypothesis, it is considered that the cause of AD is the formation and accumulation of amyloid plaques of Aβ. That is why Aβ-amyloid is the most studied representative of amyloids. Therefore, in this review, special attention is paid to the history of Aβ-amyloid toxicity. We note the main problems with anti-amyloid therapy and write about new views on amyloids that can play positive roles in the different organisms including humans.

1 May 2019 in American Journal of Physiology-Endocrinology and Metabolism
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BSBoris S. Shenkman
Boris S. Shenkman
OZOlga E. Zinovyeva
Olga E. Zinovyeva
SBSvetlana P. Belova
Svetlana P. Belova
TMTimur Mirzoev
Timur Mirzoev
NVNatalia A. Vilchinskaya
Natalia A. Vilchinskaya
TNTatiana Nemirovskaya
Tatiana Nemirovskaya
Alcoholic myopathy is characterized by the reduction in cross-sectional area (CSA) of muscle fibers and impaired anabolic signaling. The goal of the current study was to investigate the causes and compare the changes in CSA and fiber type composition with the modifications of anabolic and catabolic signaling pathways at the early stages of chronic alcohol consumption in women. Skeletal muscle samples from 5 female patients with alcohol abuse (AL; 43 ± 5 yr old; alcohol abuse duration 5,6 ± 0,6 yr) were compared with the muscle from the control group of 8 healthy women (C; 35 ± 4 yr old). The average daily dose of alcohol consumption was 110 ± 10 ml of pure ethanol. In women patients, a significant decrease in CSA of type I and II muscle fibers, titin and nebulin content, plasma IGF-1 level and total IRS-1, p-Akt and p-4E-BP1 in vastus lateralis was found in comparison with the control group. The p-AMPK level was found to be increased versus the control group. In women patients with chronic alcoholic myopathy 1) both fast and slow muscle fibers are subjected to atrophy; 2) impairments in IGF-I-dependent signaling and pathways controlling translation initiation (AMPK/mTOR/4E-BP1), but not translation elongation, are observed; 3) the level of calpain-1 and ubiquitinated proteins increases, unlike E3 ligases content.

1 November 2019 in Colloids and Surfaces B: Biointerfaces
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ABAlexander G Bobylev
Alexander G Bobylev
OKOlga A. Kraevaya
Olga A. Kraevaya
LBLiya G. Bobyleva
Liya G. Bobyleva
EKEkaterina A. Khakina
Ekaterina A. Khakina
RFRoman S. Fadeev
Roman S. Fadeev
Pavel TroshinPavel Troshin
Pavel Troshin

4 July 2017 in Journal of Biomolecular Structure and Dynamics
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Elmira YakupovaElmira Yakupova
Elmira Yakupova
Ivan VikhlyantsevIvan Vikhlyantsev
Ivan Vikhlyantsev
LBLiya Bobyleva
Liya Bobyleva
NPNikita Penkov
Nikita Penkov
ATAlexander A. Timchenko
Alexander A. Timchenko
ABAlexander G Bobylev
Alexander G Bobylev
A comparative study of amyloid properties of the aggregates of smooth muscle titin (SMT) from chicken gizzard was carried out. These aggregates were formed in two solutions: 0.15 M glycine-KOH, pH 7.2–7.4 (SMT(Gly)) and 0.2 M KCl, 10 mM imidazole, pH 7.0 (SMT(KCl)). Electron microscopy data showed that SMT aggregates has an amorphous structure in both cases. The results of atomic-force microscopy demonstrated slight differences in morphology in two types of aggregates. The SMT(Gly) aggregates were represented as branching chains, composed of spherical aggregates approximately 300–500 nm in diameter and up to 35 nm in height. The SMT(KCl) aggregates formed sponge-like structures with strands of 8–10 nm in height. Structural analysis of SMT aggregates by X-ray diffraction revealed the presence of cross-β-sheet structure in the samples under study. In the presence of SMT(Gly) aggregates, thioflavine T fluorescence intensity was higher (~3-fold times) compared with that in the presence of SMT(KCl) aggregates. Congo red-stained SMT(Gly) aggregates had yellow to apple-green birefringence under polarized light, which was not observed for SMT(KCl) aggregates. Dynamic light scattering data showed the similar rate of aggregation for both types of aggregates, though SMT(KCl) aggregates were able to partially disaggregate under increased ionic strength of the solution. The ability of SMT to aggregation followed by disaggregation may be functionally significant in the cell.