Saima Sadaf

Saima Sadaf


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2017 in Journal of Proteomics
Verified
Journal Article
Closed access
SGSaba Ghazanfar
Saba Ghazanfar
IFIram Fatima
Iram Fatima
MAMuhammad Aslam
Muhammad Aslam
SMSyed Ghulam Musharraf
Syed Ghulam Musharraf
NSNicholas E. Sherman
Nicholas E. Sherman
SSSaima Sadaf
Saima Sadaf

1 August 2021 in Metabolites
Verified
Journal Article
Open access
PDF file
SFSafia Firdous
Safia Firdous
RARizwan Abid
Rizwan Abid
ZNZubair Nawaz
Zubair Nawaz
FBFaisal Bukhari
Faisal Bukhari
AAAmmar Anwer
Ammar Anwer
SSSaima Sadaf
Saima Sadaf
Metabolic alterations play a crucial role in glioma development and progression and can be detected even before the appearance of the fatal phenotype. We have compared the circulating metabolic fingerprints of glioma patients versus healthy controls, for the first time, in a quest to identify a panel of small, dysregulated metabolites with potential to serve as a predictive and/or diagnostic marker in the clinical settings. High-resolution magic angle spinning nuclear magnetic resonance spectroscopy (HRMAS-NMR) was used for untargeted metabolomics and data acquisition followed by a machine learning (ML) approach for the analyses of large metabolic datasets. Cross-validation of ML predicted NMR spectral features was done by statistical methods (Wilcoxon-test) using JMP-pro16 software. Alanine was identified as the most critical metabolite with potential to detect glioma with precision of 1.0, recall of 0.96, and F1 measure of 0.98. The top 10 metabolites identified for glioma detection included alanine, glutamine, valine, methionine, N-acetylaspartate (NAA), γ-aminobutyric acid (GABA), serine, α-glucose, lactate, and arginine. We achieved 100% accuracy for the detection of glioma using ML algorithms, extra tree classifier, and random forest, and 98% accuracy with logistic regression. Classification of glioma in low and high grades was done with 86% accuracy using logistic regression model, and with 83% and 79% accuracy using extra tree classifier and random forest, respectively. The predictive accuracy of our ML model is superior to any of the previously reported algorithms, used in tissue- or liquid biopsy-based metabolic studies. The identified top metabolites can be targeted to develop early diagnostic methods as well as to plan personalized treatment strategies.

1 December 2019 in Journal of Biotechnology
Verified
Journal Article
Closed access
ABabdul basit
abdul basit
RTRazia Tajwar
Razia Tajwar
SSSaima Sadaf
Saima Sadaf
Yang ZhangYang Zhang
Yang Zhang
MAMuhammad Akhtar
Muhammad Akhtar
1

1 December 2018 in Biotechnology Reports
Verified
Journal Article
Open access
ABabdul basit
abdul basit
FAFaiza Asghar
Faiza Asghar
SSSaima Sadaf
Saima Sadaf
MAMuhammad Akhtar
Muhammad Akhtar
Hair, being one of the most important components of the beauty care processes, attracts the use of a variety of hair treating cosmetics. Conventional hair treating cosmetics are not satisfactory for one reason or the other. Commercially used keratins are isolated from wool or chicken feathers. As these lack complete sequence identity with human hair keratin, are likely to be less efficient than the human hair keratin. K31, a type I acidic keratin, is a major protein of human hair keratin complex and it is essential for maintaining the hair tensile strength. In this study keratin K31 (46 kDa) gene was expressed in Escherichia coli at a level of approximately 35% of the total cell proteins. The protein, however, was expressed as insoluble inclusion bodies. The expressed protein was refolded and purified by FPLC using an anion-exchange column. The CD analysis results showed that the K31 was properly refolded. MALDI-TOF mass spectroscopy showed the characteristics expected for human K31 keratin. The refolded and partially purified K31 protein, when applied on chemically damaged hairs, increased the diameter of the hair up to 49%. The mechanical strength of the bleached hair increased by almost 2 fold after a single treatment of K31. The protein also straightened curly hair efficiently on a single treatment for one hour. Application of K31 resulted in marked improvements in smoothness, diameter and mechanical strength of the damaged hair.
1

18 April 2019 in Pakistan Journal of Zoology
Verified
Journal Article
Open access
JSJawaria Shaheen
Jawaria Shaheen
SSSamiah Shahid
Samiah Shahid
SSSabahat Shahzadi
Sabahat Shahzadi
MAM. Waheed Akhtar
M. Waheed Akhtar
SSSaima Sadaf
Saima Sadaf
Identification of Circulating miRNAs as Non-Invasive Biomarkers of Triple Negative Breast Cancer in the Population of Pakistan

20 November 2019 in Proteomics – Clinical Applications
Verified
Journal Article
Closed access
PDF file
SNShahzadi Noreen
Shahzadi Noreen
QGQurratulann Afza Gardener
Qurratulann Afza Gardener
IFIram Fatima
Iram Fatima
SSSaima Sadaf
Saima Sadaf
MAMuhammad Akhtar
Muhammad Akhtar