Xiaofang Yu

Xiaofang Yu


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 January 2024 in BMC Plant Biology
Verified
Journal Article
Open access
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YLYipu Li
Yipu Li
ZSZhijun Su
Zhijun Su
YLYanan Lin
Yanan Lin
ZXZhenghan Xu
Zhenghan Xu
HBHaizhu Bao
Haizhu Bao
JGJu-lin Gao
Ju-lin Gao
Background: Drought stress can substantially restrict maize growth and productivity, and global warming and an increasing frequency of extreme weather events are likely to result in more yield losses in the future. Therefore, unraveling the molecular mechanism underlying the response to drought stress is essential for breeding drought-resilient crops. Results: In this study, we subjected the 3-leaf-period plants of two maize inbred lines, a drought-tolerant line (si287) and a drought-sensitive line (X178), to drought stress for seven days while growing in a chamber. Subsequently, we measured physiological traits and analyzed transcriptomic and metabolic profiles of two inbred lines. Our KEGG analysis of genes and metabolites revealed significant differences in pathways related to glycolysis/gluconeogenesis, flavonoid biosynthesis, starch and sucrose metabolism, and biosynthesis of amino acids. Additionally, our joint analysis identified proline, tryptophan and phenylalanine are crucial amino acids for maize response to drought stress. Furthermore, we concentrated on tryptophan (Trp), which was found to enhance tolerance via IAA-ABA signaling, as well as SA and nicotinamide adenine dinucleotide (NAD) consequent reactive oxygen species (ROS) scavenging. We identified three hub genes in tryptophan biosynthesis, indole-3-acetaldehyde oxidase (ZmAO1, 542,228), catalase 1 (ZmCAT1, 542,369), and flavin-containing monooxygenase 6 (ZmYUC6, 103,629,142), High expression of these genes plays a significant role in regulating drought tolerance. Two metabolites related to tryptophan biosynthesis, quinolinic acid, and kynurenine improved maize tolerance to drought stress by scavenging reactive oxygen species. Conclusions: This study illuminates the mechanisms underlying the response of maize seedlings to drought stress. Especially, it identifies novel candidate genes and metabolites, enriching our understanding of the role of tryptophan in drought stress. The identification of distinct resistance mechanisms in maize inbred lines will facilitate the exploration of maize germplasm and the breeding of drought-resilient hybrids.

1 November 2023 in Scientific Reports
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Journal Article
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YLYipu Li
Yipu Li
HBHaizhu Bao
Haizhu Bao
ZXZhenghan Xu
Zhenghan Xu
SHShuping Hu
Shuping Hu
JSJiying Sun
Jiying Sun
JGJu-lin Gao
Ju-lin Gao
Due to the ongoing global warming, maize production worldwide is expected to be heavily inflicted by droughts. The grain yield of maize hybrids is an important factor in evaluating their suitability and stability. In this study, we utilized the AMMI model and GGE biplot to analyze grain yield of 20 hybrids from the three tested environments in Inner Mongolia in 2018 and 2019, aiming at selecting drought-tolerant maize hybrids. AMMI variance analysis revealed highly significant difference on main effects for genotype, environment, and their interaction. Furthermore, G11 (DK159) and G15 (JKY3308) exhibited favorable productivity and stability across all three test environments. Moreover, G10 (LH1) emerged as the most stable hybrid according to the AMMI analysis and the GGE biplot. Bayannur demonstrated the highest identification ability among the three tested sites. Our study provides accurate identification for drought-resilient maize hybrids in different rain-fed regions. These findings can contribute to the selection of appropriate hybrids that exhibit productivity, stability, and adaptability in drought-prone conditions.

11 July 2019 in Agronomy
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Journal Article
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XYXiaofang Yu
Xiaofang Yu
QZQi Zhang
Qi Zhang
JGJulin Gao
Julin Gao
ZWZhigang Wang
Zhigang Wang
BQborgijin qinggeer
borgijin qinggeer
DMDaling Ma
Daling Ma
This study examined the planting density tolerance, grain yield improvement potential, and mechanisms of high-yielding spring maize varieties under increasing planting density and subsoiling. We planted two high-yielding spring maize varieties with a high or low tolerance to high planting densities (LM33 and XD20, respectively) at five different densities (D1: 60,000 plants ha−1, D2: 75,000 plants ha−1, D3: 90,000 plants ha−1, D4: 105,000 plants ha−1, and D5: 120,000 plants ha−1) using two tillage methods (35-cm subsoiling and 15-cm traditional rotary tillage). The response characteristics used to compare the performance of the two maize varieties under different planting densities and tillage methods included root characteristics, canopy physiology, yield, and yield components. The results show that: (1) Under rotary tillage, with the increase of planting density from 75,000 plants ha−1 to 90,000 plants ha−1, yields of high-yielding spring maize varieties improved. However, when the planting densities were beyond 90,000 plants ha−1, the yields stopped increase, or even decrease. Subsoiling increased the planting density by 15,000 plants ha−1, enhanced the highest yield by 1080 kg ha−1–1940 kg ha−1, and raised the yield gain by 11.17–30.72%. (2) Under rotary tillage, the functional indexes of the roots and canopy of high-yielding spring maize decreased as planting density increased, and the largest reductions of root dry weight, leaf area index (LAI) of post-anthesis, light transmission percentage (LTP) of ear leaves, bottom leaves LTP, and dry matter accumulation all occurred between D2 and D4. The largest decline of high tolerance variety emerged between D3 and D5, and the extent was smaller than the low tolerance variety. (3) Compared with rotary tillage, subsoiling reduced the extent declines in root dry weight, root length, and root surface area; delayed the attenuation of LAI and the relative chlorophyll content (SPAD) determined in leaves; and improved the LTP of ear layers and bottom layer during the late growth stage. The post-anthesis populations dry matter accumulation of XD20 and LM33 increased by 7.07% and 13.18%, respectively. In addition, subsoiling significantly increased the number of kernels/spike and 1000-grain weight as the planting density increased. Meanwhile, the planting densities at which dry root weight, population LAI, ear leaf LTP, bottom leaf LTP, and dry matter accumulation arose the largest reductions was raised to 15,000 plants ha−1. The effects of subsoiling in the high density-tolerant variety were more pronounced than the low density-tolerant variety.

8 July 2022 in PLOS ONE
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Journal Article
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XZXin Zhang
Xin Zhang
QBQinggeer Borjigin
Qinggeer Borjigin
JGJu-lin Gao
Ju-lin Gao
XYXiaofang Yu
Xiaofang Yu
BZBizhou Zhang
Bizhou Zhang
SZSainan Zhang
Sainan Zhang
This study explored changes in the microbial community structure during straw degradation by a microbial decomposer, M44. The microbial community succession at different degradation periods was analyzed using MiSeq high-throughput sequencing. The results showed that 14 days after inoculation, the filter paper enzyme and endoglucanase activities increased to 2.55 U·mL-1 and 2.34 U·mL-1. The xylanase, laccase, and lignin peroxidase activities rose to 9.86 U·mL-1, 132.16 U·L-1, and 85.43 U·L-1 after 28 d, which was consistent with changes in the straw degradation rate. The degradation rates of straw, lignin, cellulose, and hemicellulose were 31.43%, 13.67%, 25.04%, and 21.69%, respectively, after 28 d of fermentation at 15°C. Proteobacteria, Firmicutes, and Bacteroidetes were the main bacterial species in samples at different degradation stages. The dominant genera included Pseudomonas, Delftia, and Paenibacillus during the initial stage (1 d, 7 d) and the mid-term stage (14 d). The key functional microbes during the late stage (21 d, 28 d) were Rhizobium, Chryseobacterium, Sphingobacterium, Brevundimonas, and Devosia. Changes in the bacterial consortium structure and straw degradation characteristics during different degradation periods were clarified to provide a theoretical basis for the rational utilization of microbial decomposer M44.

27 February 2023 in Agronomy
Verified
Journal Article
Open access
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HZHao Zhang
Hao Zhang
JGJu-lin Gao
Ju-lin Gao
XYXiaofang Yu
Xiaofang Yu
DMDaling Ma
Daling Ma
SHShuping Hu
Shuping Hu
TSTianao Shen
Tianao Shen
To clarify the effect of tillage methods on saline–alkali land improvement and maize growth in cropland salinized to different degrees, we set up two treatments (shallow rotation (15 cm depth; CK) and deep straw return (35 cm depth; DPR)) in land characterized by three different salinization degrees and analyzed the effects of the two treatments on soil nutrient content, salinity index, chlorophyll fluorescence, growth status, and yield at three salinization levels. The results show that (1) compared with CK, alkaline N, total N, Olsen P, exchangeable K, and organic matter in saline soils were all significantly improved, and total salt and pH values were reduced by 34.01–50.79% and 2.56–7.54%, respectively, under deep straw return conditions, representing the largest values in moderately saline–alkali land. (2) Compared with CK, chlorophyll fluorescence was significantly improved, and maximum photochemical efficiency (Fv/Fm), photochemical quenching (qP), and effective quantum yield of PSII (ΦPSII) were significantly increased by 8.09–15.41%, 9.13–17.93%, and 38.79–70.83% following deep straw return treatment; these increases were the largest ones observed in moderately saline–alkali land. (3) Deep straw return promoted the growth of maize and significantly increased the yield of maize. Plant height, leaf area index, and yield increased the most in moderately saline–alkali land and increased by 6.84–21.79%, 0.59–2.28 units, and 12.78–28.07%, respectively. The yield increased by 33.89 %, which was mainly due to the increase in 1000-grain weight. The results provide a theoretical basis for taking straw return measures to improve soil and increase maize yield in saline–alkali land.

23 November 2022 in Scientific Reports
Verified
Journal Article
Open access
PDF file
XZXin Zhang
Xin Zhang
QBQinggeer Borjigin
Qinggeer Borjigin
JGJu-lin Gao
Ju-lin Gao
XYXiaofang Yu
Xiaofang Yu
SHShu-Ping Hu
Shu-Ping Hu
SHSheng-Cai Han
Sheng-Cai Han
To systematically explore and analyze the microbial composition and function of microbial consortium M44 with straw degradation in the process of subculture at low temperature. In this study, straw degradation characteristics of samples in different culture stages were determined. MiSeq high-throughput sequencing technology was used to analyze the evolution of community structure and its relationship with degradation characteristics of microbial consortium in different culture periods, and the PICRUSt function prediction analysis was performed. The results showed that straw degradation rate, endoglucanase activity, and filter paper enzyme activity of M44 generally decreased with increasing culture algebra. The activities of xylanase, laccase, and lignin peroxidase, as well as VFA content, showing a single-peak curve change with first an increase and then decrease. In the process of subculture, Proteobacteria, Bacteroidetes, and Firmicutes were dominant in different culture stages. Pseudomonas, Flavobacterium, Devosia, Brevundimonas, Trichococcus, Acinetobacter, Dysgonomonas, and Rhizobium were functional bacteria in different culture stages. It was found by PICRUSt function prediction that the functions were concentrated in amino acid transport and metabolism, carbohydrate transship and metabolism related genes, which may contain a large number of fibers and lignin degrading enzyme genes. In this study, the microbial community succession and the gene function in different culture periods were clarified and provide a theoretical basis for screening and rational utilization of microbial consortia.