Chon-Sik Kang

Chon-Sik Kang


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 August 2019 in Plants
Verified
Journal Article
Open access
PDF file
YLYun Gyeong Lee
Yun Gyeong Lee
SCSang Chul Choi
Sang Chul Choi
YKYUNA KANG
YUNA KANG
KKKyeong Min Kim
Kyeong Min Kim
CKChon-Sik Kang
Chon-Sik Kang
Changsoo KimChangsoo Kim
Changsoo Kim
The whole genome sequencing (WGS) has become a crucial tool in understanding genome structure and genetic variation. The MinION sequencing of Oxford Nanopore Technologies (ONT) is an excellent approach for performing WGS and it has advantages in comparison with other Next-Generation Sequencing (NGS): It is relatively inexpensive, portable, has simple library preparation, can be monitored in real-time, and has no theoretical limits on reading length. Sorghum bicolor (L.) Moench is diploid (2n = 2x = 20) with a genome size of about 730 Mb, and its genome sequence information is released in the Phytozome database. Therefore, sorghum can be used as a good reference. However, plant species have complex and large genomes when compared to animals or microorganisms. As a result, complete genome sequencing is difficult for plant species. MinION sequencing that produces long-reads can be an excellent tool for overcoming the weak assembly of short-reads generated from NGS by minimizing the generation of gaps or covering the repetitive sequence that appears on the plant genome. Here, we conducted the genome sequencing for S. bicolor cv. BTx623 while using the MinION platform and obtained 895,678 reads and 17.9 gigabytes (Gb) (ca. 25× coverage of reference) from long-read sequence data. A total of 6124 contigs (covering 45.9%) were generated from Canu, and a total of 2661 contigs (covering 50%) were generated from Minimap and Miniasm with a Racon through a de novo assembly using two different tools and mapped assembled contigs against the sorghum reference genome. Our results provide an optimal series of long-read sequencing analysis for plant species while using the MinION platform and a clue to determine the total sequencing scale for optimal coverage that is based on various genome sizes.

30 December 2012 in Korean Journal of Breeding Science
Verified
Journal Article
Closed access
CPChul Soo Park
Chul Soo Park
JHJong-Nae Hyun
Jong-Nae Hyun
SSSang-Hyun Shin
Sang-Hyun Shin
JPJong-Chul Park
Jong-Chul Park
CKChon-Sik Kang
Chon-Sik Kang
KKKyeong-Hoon Kim
Kyeong-Hoon Kim

22 December 2018 in Journal of Crop Science and Biotechnology
Verified
Journal Article
Closed access
PDF file
SCSeongwoo Cho
Seongwoo Cho
SKSeong-Wook Kang
Seong-Wook Kang
TKTaek-Gyu Kang
Taek-Gyu Kang
CPChul Soo Park
Chul Soo Park
Changsoo KimChangsoo Kim
Changsoo Kim
CKChon-Sik Kang
Chon-Sik Kang

30 September 2009 in The Plant Pathology Journal
Verified
Journal Article
Open access
JPJong-Chul Park
Jong-Chul Park
GJGilda Jonson
Gilda Jonson
TNTae-Hwan Noh
Tae-Hwan Noh
CPChul-Soo Park
Chul-Soo Park
CKChon-Sik Kang
Chon-Sik Kang
HKHyung-Moo Kim
Hyung-Moo Kim

30 June 2013 in Korean Journal of Breeding Science
Verified
Journal Article
Closed access
CKChon-Sik Kang
Chon-Sik Kang
Kyunghoon KimKyunghoon Kim
Kyunghoon Kim
SSSanghyun Shin
Sanghyun Shin
JSJae-Han Son
Jae-Han Son
JHJongnae Hyun
Jongnae Hyun
CPChul Soo Park
Chul Soo Park