A rapid temperature increase in the 1980-90s has been accompanied by dramatic and unprecedented changes in the biota and communities of the Ligurian Sea. This review uses existing historical series (a few of which have been purposely updated) to assess extent and consequences of such changes. A number of warm-water species, previously absent or occasional in the comparatively cold Ligurian Sea, has recently established thanks to warmer winters. Occurrence among them of invasive alien species is causing concern because of their capacity of outcompeting autochthonous species. Summer heatwaves, on the other hand, caused mass mortalities in marine organisms, some of which found refuge at depth. New marine diseases appeared, as well as other dysfunctions such as the formation of mucilage aggregates that suffocated and entangled benthic organisms. Human pressures have combined with climate change to cause phase shifts (i.e., abrupt variations in species composition and community structure) in different habitats, such as the pelagic environment, seagrass meadows, rocky reefs, and marine caves. These phase shifts implied biotic homogenization, reduction of diversity, and dominance by invasive aliens, and may be detrimental to the resilience of Ligurian Sea ecosystems. Another phase of rapid warming has possibly started in the 2010s and there are clues pointing to a further series of biological changes, but data are too scarce to date for proper assessment. Only well addressed long-term studies will help understanding the future dynamics of Ligurian Sea ecosystems and their possibilities of recovery.

Biodiversity is a portmanteau word to indicate the variety of life at all levels from genes to ecosystems, but it is often simplistically equated to species richness; the word ecodiversity has thus been coined to address habitat variety. Biodiversity represents the core of the natural capital, and as such needs to be quantified and followed over time. Marine Protected Areas (MPAs) are a major tool for biodiversity conservation at sea. Monitoring of both species and habitat diversity in MPAs is therefore mandatory and must include both inventory and periodic surveillance activities. In the case of inventories, the ideal would be to census all species and all habitats, but while the latter goal can be within reach, the former seems unattainable. Species inventory should be commeasured to investigation effort, while habitat inventory should be based on mapping. Both inventories may profit from suitability spatial modelling. Periodic surveillance actions should privilege conspicuous species and priority habitats. Efficient descriptor taxa and ecological indices are recommended to evaluate environmental status. While it seems obvious that surveillance activities should be carried out with regular recurrence, diachronic inventories and mapping are rarely carried out. Time series are of prime importance to detect marine ecosystem change even in the absence of direct human impacts.

Seawater warming is impacting marine ecosystems, but proper evaluation of change requires the availability of long-term biological data series. Mesco Reef (Ligurian Sea, Italy) offers one of the longest Mediterranean data series on sessile epibenthic communities, based on underwater photographic surveys. Photographs taken in four stations between 20 m and 40 m depth allowed calculating the percent cover of conspicuous species in 1961, 1990, 1996, 2008, and 2017. Multivariate analysis evidenced an abrupt compositional change between 1990 and 1996. A parallel change was observed in Ligurian Sea temperatures. Two invasive macroalgae (Caulerpa cylindracea and Womersleyella setacea) became dominant after 1996. Community diversity was low in 1961 to 1996, rapidly increased between 1996 and 2008, and exhibited distinctly higher values in 2008–2017. A novel community emerged from the climate shift of the 1990s, with many once characteristic species lost, reduced complexity, biotic homogenization, greater diversity and domination by aliens. Only continued monitoring will help envisage the possibility for a reversal of the present phase shift or for further transformations driven by global change.

Sustainable and ecosystem-based marine spatial planning is a priority of Pacific Island countries basing their economy on marine resources. The urgency of management coral reef systems and associated coastal environments, threatened by the effects of climate change, require a detailed habitat mapping of the present status and a future monitoring of changes over time. Here, we present a remote sensing study using free available Sentinel-2 imagery for mapping at large scale the most sensible and high value habitats (corals, seagrasses, mangroves) of Palau Republic (Micronesia, Pacific Ocean), carried out without any sea truth validation. Remote sensing ‘supervised’ and ‘unsupervised’ classification methods applied to 2017 Sentinel-2 imagery with 10 m resolution together with comparisons with free ancillary data on web platform and available scientific literature were used to map mangrove, coral, and seagrass communities in the Palau Archipelago. This paper addresses the challenge of multispectral benthic mapping estimation using commercial software for preprocessing steps (ERDAS ATCOR) and for benthic classification (ENVI) on the base of satellite image analysis. The accuracy of the methods was tested comparing results with reference NOAA (National Oceanic and Atmospheric Administration, Silver Spring, MD, USA) habitat maps achieved through Ikonos and Quickbird imagery interpretation and sea-truth validations. Results showed how the proposed approach allowed an overall good classification of marine habitats, namely a good concordance of mangroves cover around Palau Archipelago with previous literature and a good identification of coastal habitats in two sites (barrier reef and coastal reef) with an accuracy of 39.8–56.8%, suitable for survey and monitoring of most sensible habitats in tropical remote islands.

Clonal propagation is a common feature of benthic marine organisms. In the present study, we investigated the contribution of clonal reproduction in the red gorgonian Paramuricea clavata. Mediterranean populations of P. clavata were severely affected by mass mortality events caused by increased water temperature in 1999 and 2003. The populations are characterized by slow growth and episodic recruitment, but after the observed mortalities, an unexpectedly high recovery rate was observed in the severely affected populations from the Ligurian Sea, NW Mediterranean. Ten years after the last mortality event, we investigated the contribution of clonal propagation in populations from the Ligurian Sea, where some populations were highly affected by mass mortality events, and from the Atlantic, where mortality was never observed. All individuals were genotyped for nine microsatellite loci. The contribution of clonal reproduction varied from 0% to 13% and did not differ significantly between affected and unaffected populations. We confirm by using genetic markers that clonal propagation in P. clavata is not common, and that the contribution of clones is too low to play an important role in red gorgonian reproduction and cannot contribute to population recovery at sites that have been affected by mass mortality events.