Amazonian environments are being degraded by modern industrial and agricultural activities at a pace far above anything previously known, imperiling its vast biodiversity reserves and globally important ecosystem services. The most substantial threats come from regional deforestation, because of export market demands, and global climate change. The Amazon is currently perched to transition rapidly from a largely forested to a nonforested landscape. These changes are happening much too rapidly for Amazonian species, peoples, and ecosystems to respond adaptively. Policies to prevent the worst outcomes are known and must be enacted immediately. We now need political will and leadership to act on this information. To fail the Amazon is to fail the biosphere, and we fail to act at our peril.

Diversification of Amazon birds led by climate stability: lineages originated in the wetter west and dispersed into the drier east.

The Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) pandemic reveals a major gap in global biosecurity infrastructure: a lack of publicly available biological samples representative across space, time, and taxonomic diversity. The shortfall, in this case for vertebrates, prevents accurate and rapid identification and monitoring of emerging pathogens and their reservoir host(s) and precludes extended investigation of ecological, evolutionary, and environmental associations that lead to human infection or spillover. Natural history museum biorepositories form the backbone of a critically needed, decentralized, global network for zoonotic pathogen surveillance, yet this infrastructure remains marginally developed, underutilized, underfunded, and disconnected from public health initiatives. Proactive detection and mitigation for emerging infectious diseases (EIDs) requires expanded biodiversity infrastructure and training (particularly in biodiverse and lower income countries) and new communication pipelines that connect biorepositories and biomedical communities. To this end, we highlight a novel adaptation of Project ECHO’s virtual community of practice model: Museums and Emerging Pathogens in the Americas (MEPA). MEPA is a virtual network aimed at fostering communication, coordination, and collaborative problem-solving among pathogen researchers, public health officials, and biorepositories in the Americas. MEPA now acts as a model of effective international, interdisciplinary collaboration that can and should be replicated in other biodiversity hotspots. We encourage deposition of wildlife specimens and associated data with public biorepositories, regardless of original collection purpose, and urge biorepositories to embrace new specimen sources, types, and uses to maximize strategic growth and utility for EID research. Taxonomically, geographically, and temporally deep biorepository archives serve as the foundation of a proactive and increasingly predictive approach to zoonotic spillover, risk assessment, and threat mitigation.

Amazonia (defined herein as the Amazon basin) is home to the greatest concentration of biodiversity on Earth, providing unique genetic resources and ecological functions that contribute to ecosystem services globally. The lengthy and complex evolutionary history of this region has produced heterogeneous landscapes and riverscapes at multiple scales, altered the geographic and genetic connections among populations, and impacted rates of adaptation, speciation, and extinction. In turn, ecologically diverse Amazonian biotas promoted further diversification, species coexistence, and coevolution, with biodiversity accumulating over tens of millions of years. Important events in Amazonian history included: (i) late Cretaceous and early Paleogene origin of major rainforest plant and animal groups; (ii) Eocene-Oligocene global cooling with rainforests contracting to tropical latitudes separating Atlantic coastal and Amazonian rainforests; (iii) Miocene uplift of central and northern Andes that separated Pacific coastal and Amazonian rainforests, spurred formation of mega-wetlands in the western Amazon, and contributed to the origin of the modern transcontinental Amazon River; (iv) late Neogene formation of the Panamanian Isthmus that facilitated the Great American Biotic Interchange; (v) Pleistocene climate oscillations followed by late Pleistocene-Holocene human colonization and megafaunal extinctions; and (vi) modern era of widespread anthropogenic deforestation, defaunation, and ecological transformations of regional landscapes and global climates. Amazonian conservation requires decade-scale investments into biodiversity documentation and monitoring to leverage existing scientific capacity, and strategic habitat planning to allow continuity of evolutionary and ecological processes now and into the future.