Alejandra Rodríguez Ortiz

Dr. Alejandra Rodríguez Ortiz

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
LULeidy Marcela Ulloa-Murillo
Leidy Marcela Ulloa-Murillo
LVLina María Villegas
Lina María Villegas
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz
MAMónica Duque Acevedo
Mónica Duque Acevedo
FCFrancisco Joaquín Cortés-García
Francisco Joaquín Cortés-García
The main objective of this research is to analyze the most relevant aspects of the management of the organic fraction of municipal solid waste (OFMSW) and the Sustainable and Circular Production Models (SCPMs) in Latin America and the Caribbean (LAC). The bibliometric method was used for the analysis of 190 studies obtained from the Scopus and Latin America and The Caribbean on Health Sciences (LILACS) databases. The systematic review provided information on the main research approaches: identification and characterization; quantification; strategic and interdisciplinary management; and processes for treatment or valorization. Finally, an evaluation of public policies and strategies was performed. The results show that Brazil, Mexico, and Colombia have the highest number of publications on OFMSW. The findings also indicate that both research and policy strategies on SCPMs prioritize bioenergy and biofuels as the leading alternatives for the valorization of OFMSW. It also reflects the relevance of the Circular Economy (CE) and Bioeconomy (BE) as the main drivers of waste recovery and/or valorization in LAC. These aspects are of great interest to governments that are still in the process of implementing SCPMs. However, for those more advanced in this area, it provides valuable information on progress, policy effectiveness, and future actions for improvement.

1 January 2021 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
JMJulieth Murillo
Julieth Murillo
LVLina María Villegas
Lina María Villegas
LULeidy Marcela Ulloa-Murillo
Leidy Marcela Ulloa-Murillo
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz

17 December 2021 in Genes
Verified
Journal Article
Open access
PDF file
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz
JVJulio César Montoya Villegas
Julio César Montoya Villegas
JGJesus Felipe Garcia
Jesus Felipe Garcia
YMYecid Mina-Paz
Yecid Mina-Paz
DNA methylation and histone posttranslational modifications are epigenetics processes that contribute to neurophenotype of Down Syndrome (DS). Previous reports present strong evidence that nonhistone high-mobility-group N proteins (HMGN) are epigenetic regulators. They play important functions in various process to maintain homeostasis in the brain. We aimed to analyze the differential expression of five human HMGN genes in some brain structures and age ranks from DS postmortem brain samples. Methodology: We performed a computational analysis of the expression of human HMGN from the data of a DNA microarray experiment (GEO database ID GSE59630). Using the transformed log2 data, we analyzed the differential expression of five HMGN genes in several brain areas associated with cognition in patients with DS. Moreover, using information from different genome databases, we explored the co-expression and protein interactions of HMNGs with the histones of nucleosome core particle and linker H1 histone. Results: We registered that HMGN1 and HMGN5 were significantly overexpressed in the hippocampus and areas of prefrontal cortex including DFC, OFC, and VFC of DS patients. Age-rank comparisons between euploid control and DS individuals showed that HMGN2 and HMGN4 were overexpressed in the DS brain at 16 to 22 gestation weeks. From the BioGRID database, we registered high interaction scores of HMGN2 and HMGN4 with Hist1H1A and Hist1H3A. Conclusions: Overall, our results give strong evidence to propose that DS would be an epigenetics-based aneuploidy. Remodeling brain chromatin by HMGN1 and HMGN5 would be an essential pathway in the modification of brain homeostasis in DS.

1 April 2022 in Genes
Verified
Journal Article
Open access
PDF file
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz
JVJulio César Montoya Villegas
Julio César Montoya Villegas
JGJesus Felipe Garcia
Jesus Felipe Garcia
YMYecid Mina-Paz
Yecid Mina-Paz
Background: Although Down syndrome (DS) is the most frequent human chromosomal disorder and it causes mainly intellectual disability, its clinical presentation is complex and variable. Objective: We aimed to analyze and compare the transcriptome disruption in several brain areas from individuals with DS and euploid controls as a new approach to consider a global systemic differential disruption of gene expression beyond chromosome 21. Methods: We used data from a DNA microarray experiment with ID GSE59630 previously deposited in the GEO DataSet of NCBI database. The array contained log2 values of 17,537 human genes expressed in several aeras of the human brain. We calculated the differential gene expression (Z-ratio) of all genes. Results: We found several differences in gene expression along the DS brain transcriptome, not only in the genes located at chromosome 21 but in other chromosomes. Moreover, we registered the lowest Z-ratio correlation between the age ranks of 16–22 weeks of gestation and 39–42 years (R2 = 0.06) and the highest Z-ratio correlation between the age ranks of 30–39 years and 40–42 years (R2 = 0.89). The analysis per brain areas showed that the hippocampus and the cerebellar cortex had the most different gene expression pattern when compared to the brain as a whole. Conclusions: Our results support the hypothesis of a systemic imbalance of brain protein homeostasis, or proteostasis network of cognitive and neuroplasticity process, as new model to explain the important effect on the neurophenotype of trisomy that occur not only in the loci of chromosome 21 but also in genes located in other chromosomes.

23 January 2022 in Applied Sciences
Verified
Journal Article
Open access
PDF file
YMYecid Mina-Paz
Yecid Mina-Paz
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz
DHDaniela Hernández-Pérez
Daniela Hernández-Pérez
JVJulio César Montoya Villegas
Julio César Montoya Villegas
ASAdalberto Sánchez-Gómez
Adalberto Sánchez-Gómez
JGJesus Felipe Garcia
Jesus Felipe Garcia
Introduction: Skeletal muscle plasticity in exercise can be modulated by epigenomic events such as gene silencing, histone modifications and DNA methylation. In this context, our objective was to analyze the expression of genes associated with chromatin modifications in human muscle biopsies of vastus lateralis after a 20 week training program. Methods: Using data from DNA microarray experiments registered in the NCBI GEO DataSet database GSE117070, we calculated the Z ratio values as the criterion to evaluate the differential expression of genes associated with chromatin modification during aerobic training in skeletal muscle. Using the web interface GENEMANIA, we built a co-expression interaction network with the overexpressed genes. We compared Z-score values obtained from pre-trained and post-trained samples through nonparametric tests. Results: We found 10 overexpressed genes after the 20 week training program, namely, EZH1, KMT2A, KMT2D, KDM4C, KDM6A, CREBBP, HDAC10, HDAC4, DNMT3L, and H2AX. The most relevant biological processes obtained from the network included chromatin organization (FDR 9.04 × 10−9) and histone modification (FDR 9.04 × 10−9). Conclusions: In skeletal muscle, after aerobic training, there is overexpression of genes associated with the modification of the chromatin through alterations in histones and DNA, resulting in epigenetic transcriptional changes.

26 November 2020 in International Journal of Molecular Biology: Open Access
Verified
Journal Article
Open access
PDF file
NMNancy Janneth Molano-Tobar
Nancy Janneth Molano-Tobar
AOAlejandra Rodríguez Ortiz
Alejandra Rodríguez Ortiz
FVFelipe García Vallejo
Felipe García Vallejo
Candidate gene studies in sports injuries pose a valid new approach to investigate the genetic basis of these. In this context, our objective was to analyze the differential expression and interaction of genes associated with sports injuries using a bio informatic approach. For this study, we analyzed 31 genes associated with sports injuries previously reported in the literature. Expression analysis was performed using the Z-ratio and a protein-protein interaction network was constructed in STRING 10.0. The GO categories associated with outstanding biological processes in the network were also taken from STRING 10.0. The expression network obtained allowed establishing three clusters with a significant number of interactions, the highest interactions were found in the genes COL1A1, COL1A2, COL3A1, COL4A1, COL6A1 and COL5A1. According to the Z-ratio, the most over expressed genes were ITGB6 (z-ratio 4.32), COL1A2 (z-ratio 4.07), COL6A2 (z-ratio 3.99) and TIMM17A. In conclusion, the over-expression of genes is presented, which according to the current literature has been analyzed very little, from the sports field associated with sports injuries, a fact that merits further research. Also, we highlight the importance of bioinformatics as a complementary tool to the analysis of sports genomic data.