David Salazar-Valenzuela

Dr. David Salazar-Valenzuela

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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2018 in GigaScience
Verified
Journal Article
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APAaron Pomerantz
Aaron Pomerantz
NPNicolás Peñafiel
Nicolás Peñafiel
AAAlejandro Arteaga
Alejandro Arteaga
LBLucas Bustamante
Lucas Bustamante
FPFrank Pichardo
Frank Pichardo
SPStefan Prost
Stefan Prost
Advancements in portable scientific instruments provide promising avenues to expedite field work in order to understand the diverse array of organisms that inhabit our planet. Here, we tested the feasibility for in situ molecular analyses of endemic fauna using a portable laboratory fitting within a single backpack in one of the world's most imperiled biodiversity hotspots, the Ecuadorian Chocó rainforest. We used portable equipment, including the MinION nanopore sequencer (Oxford Nanopore Technologies) and the miniPCR (miniPCR), to perform DNA extraction, polymerase chain reaction amplification, and real-time DNA barcoding of reptile specimens in the field. We demonstrate that nanopore sequencing can be implemented in a remote tropical forest to quickly and accurately identify species using DNA barcoding, as we generated consensus sequences for species resolution with an accuracy of >99% in less than 24 hours after collecting specimens. The flexibility of our mobile laboratory further allowed us to generate sequence information at the Universidad Tecnológica Indoamérica in Quito for rare, endangered, and undescribed species. This includes the recently rediscovered Jambato toad, which was thought to be extinct for 28 years. Sequences generated on the MinION required as few as 30 reads to achieve high accuracy relative to Sanger sequencing, and with further multiplexing of samples, nanopore sequencing can become a cost-effective approach for rapid and portable DNA barcoding. Overall, we establish how mobile laboratories and nanopore sequencing can help to accelerate species identification in remote areas to aid in conservation efforts and be applied to research facilities in developing countries. This opens up possibilities for biodiversity studies by promoting local research capacity building, teaching nonspecialists and students about the environment, tackling wildlife crime, and promoting conservation via research-focused ecotourism.

14 June 2018 in ZooKeys
Verified
Journal Article
Open access
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AAAlejandro Arteaga
Alejandro Arteaga
DSDavid Salazar-Valenzuela
David Salazar-Valenzuela
KMKonrad Mebert
Konrad Mebert
NPNicolás Peñafiel
Nicolás Peñafiel
GAGabriela Aguiar
Gabriela Aguiar
OTOmar Torres-Carvajal
Omar Torres-Carvajal
A molecular phylogeny of the Neotropical snail-eating snakes (tribe Dipsadini) is presented including 43 (24 for the first time) of the 77 species, sampled for both nuclear and mitochondrial genes. Morphological and phylogenetic support was found for four new species of Dipsas and one of Sibon, which are described here based on their unique combination of molecular, meristic, and color pattern characteristics. Sibynomorphus is designated as a junior subjective synonym of Dipsas. Dipsaslatifrontalis and D.palmeri are resurrected from the synonymy of D.peruana. Dipsaslatifasciata is transferred from the synonymy of D.peruana to the synonymy of D.palmeri. A new name, D.jamespetersi, is erected for the taxon currently known as Sibynomorphuspetersi. Re-descriptions of D.latifrontalis and D.peruana are presented, as well as the first photographic voucher of an adult specimen of D.latifrontalis, along with photographs of all known Ecuadorian Dipsadini species. The first country record of D.variegata in Ecuador is provided and D.oligozonata removed from the list of Peruvian herpetofauna. With these changes, the number of Dipsadini reported in Ecuador increases to 22, 18 species of Dipsas and four of Sibon.

1 October 2020 in Journal of Proteomics
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Journal Article
Closed access
DMDiana Mora-Obando
Diana Mora-Obando
DSDavid Salazar-Valenzuela
David Salazar-Valenzuela
DPDavinia Pla
Davinia Pla
Bruno LomonteBruno Lomonte
Bruno Lomonte
JVJimmy Alexander Guerrero Vargas
Jimmy Alexander Guerrero Vargas
JCJuan Calvete
Juan Calvete

26 January 2023 in Cladistics
Verified
Journal Article
Closed access
PCPaola A. Carrasco
Paola A. Carrasco
CKClaudia Koch
Claudia Koch
FGFelipe Gobbi Grazziotin
Felipe Gobbi Grazziotin
PVPablo Javier Venegas
Pablo Javier Venegas
JCJuan Chaparro
Juan Chaparro
CMCamilo I. Mattoni
Camilo I. Mattoni

25 February 2019 in PeerJ
Verified
Journal Article
Open access
PDF file
CAChristopher K. Akcali
Christopher K. Akcali
HPHibraim Adán Pérez-Mendoza
Hibraim Adán Pérez-Mendoza
DSDavid Salazar-Valenzuela
David Salazar-Valenzuela
DKDavid W. Kikuchi
David W. Kikuchi
JGJuan Guayasamin
Juan Guayasamin
DPDavid W. Pfennig
David W. Pfennig
Artificial prey techniques—wherein synthetic replicas of real organisms are placed in natural habitats—are widely used to study predation in the field. We investigated the extent to which videography could provide additional information to such studies. As a part of studies on aposematism and mimicry of coral snakes (Micrurus) and their mimics, observational data from 109 artificial snake prey were collected from video-recording camera traps in three locations in the Americas (terra firmeforest, Tiputini Biodiversity Station, Ecuador; premontane wet forest, Nahá Reserve, Mexico; longleaf pine forest, Southeastern Coastal Plain, North Carolina, USA). During 1,536 camera days, a total of 268 observations of 20 putative snake predator species were recorded in the vicinity of artificial prey. Predators were observed to detect artificial prey 52 times, but only 21 attacks were recorded. Mammals were the most commonly recorded group of predators near replicas (243) and were responsible for most detections (48) and attacks (20). There was no difference between avian or mammalian predators in their probability of detecting replicas nor in their probability of attacking replicas after detecting them. Bite and beak marks left on clay replicas registered a higher ratio of avian:mammalian attacks than videos registered. Approximately 61.5% of artificial prey monitored with cameras remained undetected by predators throughout the duration of the experiments. Observational data collected from videos could provide more robust inferences on the relative fitness of different prey phenotypes, predator behavior, and the relative contribution of different predator species to selection on prey. However, we estimate that the level of predator activity necessary for the benefit of additional information that videos provide to be worth their financial costs is achieved in fewer than 20% of published artificial prey studies. Although we suggest future predation studies employing artificial prey to consider using videography as a tool to inspire new, more focused inquiry, the investment in camera traps is unlikely to be worth the expense for most artificial prey studies until the cost:benefit ratio decreases.

1 November 2014 in Toxicon
Verified
Journal Article
Closed access
DSDavid Salazar-Valenzuela
David Salazar-Valenzuela
DMDiana Mora-Obando
Diana Mora-Obando
MFMaría Laura Fernández
María Laura Fernández
ALAmaru Loaiza-Lange
Amaru Loaiza-Lange
HGH. Lisle Gibbs
H. Lisle Gibbs
Bruno LomonteBruno Lomonte
Bruno Lomonte