Jakub Szlęk

Dr. Jakub Szlęk

Department of Pharmaceutical Technology and Biopharmaceutics, Faculty of Pharmacy, Jagiellonian University-Medical College, Medyczna 9 St, 30-688 Kraków, Poland
orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 December 2014 in AAPS PharmSciTech
Verified
Journal Article
Open access
PDF file
AKAnna Krupa
Anna Krupa
Jakub SzlękJakub Szlęk
Jakub Szlęk
BJBenedykt R. Jany
Benedykt R. Jany
RJRenata Jachowicz
Renata Jachowicz
The influence of alkaline and the neutral grade of magnesium aluminometasilicate as a porous solid carrier for the liquid self-emulsifying formulation with ibuprofen is investigated. Ibuprofen is...

17 June 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
HZHossam Zawbaa
Hossam Zawbaa
Jakub SzlękJakub Szlęk
Jakub Szlęk
CGCrina Grosan
Crina Grosan
RJRenata Jachowicz
Renata Jachowicz
Aleksander MendykAleksander Mendyk
Aleksander Mendyk
Poly-lactide-co-glycolide (PLGA) is a copolymer of lactic and glycolic acid. Drug release from PLGA microspheres depends not only on polymer properties but also on drug type, particle size, morphology of microspheres, release conditions, etc. Selecting a subset of relevant properties for PLGA is a challenging machine learning task as there are over three hundred features to consider. In this work, we formulate the selection of critical attributes for PLGA as a multiobjective optimization problem with the aim of minimizing the error of predicting the dissolution profile while reducing the number of attributes selected. Four bio-inspired optimization algorithms: antlion optimization, binary version of antlion optimization, grey wolf optimization, and social spider optimization are used to select the optimal feature set for predicting the dissolution profile of PLGA. Besides these, LASSO algorithm is also used for comparisons. Selection of crucial variables is performed under the assumption that both predictability and model simplicity are of equal importance to the final result. During the feature selection process, a set of input variables is employed to find minimum generalization error across different predictive models and their settings/architectures. The methodology is evaluated using predictive modeling for which various tools are chosen, such as Cubist, random forests, artificial neural networks (monotonic MLP, deep learning MLP), multivariate adaptive regression splines, classification and regression tree, and hybrid systems of fuzzy logic and evolutionary computations (fugeR). The experimental results are compared with the results reported by Szlȩk. We obtain a normalized root mean square error (NRMSE) of 15.97% versus 15.4%, and the number of selected input features is smaller, nine versus eleven.

1 December 2013 in International Journal of Nanomedicine
Verified
Journal Article
Open access
Aleksander MendykAleksander Mendyk
Aleksander Mendyk
Jakub SzlękJakub Szlęk
Jakub Szlęk
RJRenata Jachowicz
Renata Jachowicz
RLRaymond Lau
Raymond Lau
Adam PacławskiAdam Pacławski
Adam Pacławski
Peer reviewed article authored by (Szlęk J, Pacławski A, Lau R, Jachowicz R, Mendyk A). Read article or submit your manuscript for publishing.

20 November 2010 in European Journal of Pharmaceutical Sciences
Verified
Journal Article
Closed access
Aleksander MendykAleksander Mendyk
Aleksander Mendyk
PKPeter Kleinebudde
Peter Kleinebudde
MTMarkus Thommes
Markus Thommes
AYAngelina Yoo
Angelina Yoo
Jakub SzlękJakub Szlęk
Jakub Szlęk
RJRenata Jachowicz
Renata Jachowicz

18 April 2023 in Molecular Pharmaceutics
Verified
Journal Article
Open access
NŁNatalia Łapińska
Natalia Łapińska
Jakub SzlękJakub Szlęk
Jakub Szlęk
Adam PacławskiAdam Pacławski
Adam Pacławski
KKKlaudia Klimończyk
Klaudia Klimończyk
MPMatteo Puccetti
Matteo Puccetti
Aleksander MendykAleksander Mendyk
Aleksander Mendyk
Oral medicines represent the largest pharmaceutical market area. To achieve a therapeutic effect, a drug must penetrate the intestinal walls, the main absorption site for orally delivered active pharmaceutical ingredients (APIs). Indeed, predicting drug absorption can facilitate candidate screening and reduce time to market. Algorithms are available with good prediction accuracy that however focus only on solubility. In this work, we focused on drug permeability looking at human intestinal absorption as a marker for intestinal bioavailability. Being of considerable therapeutic relevance, APIs with serotonergic activity were selected as a dataset. Due to process complexity, experimental data scarcity, and variability, we turned toward an artificial intelligence (AI)-based system, which is a hierarchical combination of classification and regression models. This combination of seemingly two models into a single system widens the space of molecules classified as highly permeable with high accuracy. The specialized and optimized system enables in silico and structure-based prediction with a high degree of certainty. Predictions in external validation allowed correct selection of the 38% of highly permeable molecules without any false positives. The proposed system based on AI represents a promising tool useful for oral drug screening at an early stage of drug discovery and development. Datasets and the obtained models are available on the GitHub platform (https://github.com/nczub/HIA_5-HT).

13 April 2022 in Pharmaceutics
Verified
Journal Article
Open access
PDF file
Jakub SzlękJakub Szlęk
Jakub Szlęk
MKMohammad Hassan Khalid
Mohammad Hassan Khalid
Adam PacławskiAdam Pacławski
Adam Pacławski
NŁNatalia Łapińska
Natalia Łapińska
Aleksander MendykAleksander Mendyk
Aleksander Mendyk
Tablets are the most common dosage form of pharmaceutical products. While tablets represent the majority of marketed pharmaceutical products, there remain a significant number of patients who find it difficult to swallow conventional tablets. Such difficulties lead to reduced patient compliance. Orally disintegrating tablets (ODT), sometimes called oral dispersible tablets, are the dosage form of choice for patients with swallowing difficulties. ODTs are defined as a solid dosage form for rapid disintegration prior to swallowing. The disintegration time, therefore, is one of the most important and optimizable critical quality attributes (CQAs) for ODTs. Current strategies to optimize ODT disintegration times are based on a conventional trial-and-error method whereby a small number of samples are used as proxies for the compliance of whole batches. We present an alternative machine learning approach to optimize the disintegration time based on a wide variety of machine learning (ML) models through the H2O AutoML platform. ML models are presented with inputs from a database originally presented by Han et al., which was enhanced and curated to include chemical descriptors representing active pharmaceutical ingredient (API) characteristics. A deep learning model with a 10-fold cross-validation NRMSE of 8.1% and an R2 of 0.84 was obtained. The critical parameters influencing the disintegration of the directly compressed ODTs were ascertained using the SHAP method to explain ML model predictions. A reusable, open-source tool, the ODT calculator, is now available at Heroku platform.