Scott Ness

Dr. Scott Ness

University of New Mexico
+1
orcid

Research Focus & Metrics

Academic Career Length

42Years (1985-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
22 December 1989 in Cell
Verified
Journal Article
Closed access
Scott NessScott Ness
Scott Ness
ÅMÅsa Marknell
Åsa Marknell
TGThomas Graf
Thomas Graf

1 May 1993 in Genes & Development
Verified
Journal Article
Open access
PDF file
Scott NessScott Ness
Scott Ness
EKE Kowenz-Leutz
E Kowenz-Leutz
TCT Casini
T Casini
TGThomas Graf
Thomas Graf
ALA Leutz
A Leutz
The c-Myb transcription factor regulates the differentiation of immature erythroid, lymphoid, and myeloid cells, although only the latter cells become transformed by the v-myb oncogene. These are also the only cells that express the Myb-regulated gene mim-1, suggesting that Myb requires tissue-specific, cooperating factors to activate such genes. Here, we investigated the tissue-specific regulation of the mim-1 promoter and found that it not only contains binding sites for Myb but also for NF-M, a myeloid-specific transcription factor that probably corresponds to mammalian C/EBP beta. Both types of binding sites were found to be required for full activity of the promoter. Remarkably, ectopic coexpression of Myb and NF-M proteins in erythroid cells or fibroblasts was sufficient to induce endogenous markers of myeloid differentiation, like the mim-1 and lysozyme genes. Our results indicate that c-Myb and NF-M proteins act as a bipartite, combinatorial signal that regulates the expression of myeloid-specific genes, even in heterologous cell types.

1 February 2016 in Cancer Discovery
Verified
Journal Article
Open access
PDF file
KBKathryn J. Brayer
Kathryn J. Brayer
CFCandace A. Frerich
Candace A. Frerich
HKHuining Kang
Huining Kang
Scott NessScott Ness
Scott Ness
Adenoid cystic carcinoma (ACC), the second most common malignancy of salivary glands, is a rare tumor with a bleak prognosis for which therapeutic targets are unavailable. We used RNA sequencing (RNA-seq) to analyze low-quality RNA from archival, formaldehyde-fixed, paraffin-embedded samples. In addition to detecting the most common ACC translocation, t(6;9) fusing the MYB proto-oncogene to NFIB, we also detected previously unknown t(8;9) and t(8;14) translocations fusing the MYBL1 gene to the NFIB and RAD51B genes, respectively. RNA-seq provided information about gene fusions, alternative RNA splicing, and gene expression signatures. Interestingly, tumors with MYB and MYBL1 translocations displayed similar gene expression profiles, and the combined MYB and MYBL1 expression correlated with outcome, suggesting that the related MYB proteins are interchangeable oncogenic drivers in ACC. Our results provide important details about the biology of ACC and illustrate how archival tissue samples can be used for detailed molecular analyses of rare tumors. Significance: Using RNA-seq to perform whole-transcriptome analysis of archival ACC tumor samples, we identified novel, recurrent gene fusions, detected alternative RNA splicing, and established gene expression signatures that provide detailed information about the biology of ACC tumors. Cancer Discov; 6(2); 176–87. ©2015 AACR. See related commentary by Gonda and Ramsay, p. 125. This article is highlighted in the In This Issue feature, p. 109

1 October 1998 in Molecular Cell
Verified
Journal Article
Closed access
JLJoel D Leverson
Joel D Leverson
Päivi J. KoskinenPäivi J. Koskinen
Päivi J. Koskinen
FOFrank C Orrico
Frank C Orrico
EREeva-Marja Rainio
Eeva-Marja Rainio
KJKatriina J Jalkanen
Katriina J Jalkanen
Scott NessScott Ness
Scott Ness

1 August 1996 in Genes & Development
Verified
Journal Article
Open access
PDF file
ADA B Dash
A B Dash
FOF C Orrico
F C Orrico
Scott NessScott Ness
Scott Ness
The c-Myb transcription factor is a proto-oncoprotein whose latent transforming activity can be unmasked by truncation of either terminus. Because both ends of Myb are involved in negative regulation, we tested whether they could associate in a two-hybrid assay and identified a carboxy-terminal motif that interacts with the amino-terminal DNA-binding domain. The EVES motif is highly conserved in vertebrate c-Myb proteins and contains a known site of phosphorylation previously implicated in the negative regulation of c-Myb. Interestingly, a related EVES motif is present in p100, a ubiquitously expressed transcriptional coactivator found in diverse species. We show that p100 interacts with and influences the activity of c-Myb, implicating it in the regulation of c-Myb, differentiation, and cell growth. Our results suggest that Myb is regulated by a novel mechanism in which intramolecular interactions and conformational changes control the intermolecular associations among Myb, p100, and the transcriptional apparatus.

1 March 2004 in Molecular Biology of the Cell
Verified
Journal Article
Closed access
TRTamara Roitbak
Tamara Roitbak
CWChristopher J. Ward
Christopher J. Ward
PHPeter C. Harris
Peter C. Harris
RBRobert Bacallao
Robert Bacallao
Scott NessScott Ness
Scott Ness
Angela Wandinger-NessAngela Wandinger-Ness
Angela Wandinger-Ness
Autosomal dominant polycystic kidney disease (ADPKD) is typified by the accumulation of fluid-filled cysts and abnormalities in renal epithelial cell function. The disease is principally caused by mutations in the gene encoding polycystin-1, a large basolateral plasma membrane protein expressed in kidney epithelial cells. Our studies reveal that, in normal kidney cells, polycystin-1 forms a complex with the adherens junction protein E-cadherin and its associated catenins, suggesting a role in cell adhesion or polarity. In primary cells from ADPKD patients, the polycystin-1/polycystin-2/E-cadherin/β-catenin complex was disrupted and both polycystin-1 and E-cadherin were depleted from the plasma membrane as a result of the increased phosphorylation of polycystin-1. The loss of E-cadherin was compensated by the transcriptional upregulation of the normally mesenchymal N-cadherin. Increased cell surface N-cadherin in the disease cells in turn stabilized the continued plasma membrane localization of β-catenin in the absence of E-cadherin. The results suggest that enhanced phosphorylation of polycystin-1 in ADPKD cells precipitates changes in its localization and its ability to form protein complexes that are critical for the stabilization of adherens junctions and the maintenance of a fully differentiated polarized renal epithelium.