E. Fernández-Carrión

Dr. E. Fernández-Carrión

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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 September 2017 in PLOS ONE
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Journal Article
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EFE. Fernández-Carrión
E. Fernández-Carrión
Marta Martínez-AvilésMarta Martínez-Avilés
Marta Martínez-Avilés
BIBenjamin Ivorra
Benjamin Ivorra
Beatriz Martínez-LópezBeatriz Martínez-López
Beatriz Martínez-López
ÁRÁngel Manuel Ramos
Ángel Manuel Ramos
JSJosé Manuel Sánchez-Vizcaíno
José Manuel Sánchez-Vizcaíno
Early detection of infectious diseases can substantially reduce the health and economic impacts on livestock production. Here we describe a system for monitoring animal activity based on video and data processing techniques, in order to detect slowdown and weakening due to infection with African swine fever (ASF), one of the most significant threats to the pig industry. The system classifies and quantifies motion-based animal behaviour and daily activity in video sequences, allowing automated and non-intrusive surveillance in real-time. The aim of this system is to evaluate significant changes in animals’ motion after being experimentally infected with ASF virus. Indeed, pig mobility declined progressively and fell significantly below pre-infection levels starting at four days after infection at a confidence level of 95%. Furthermore, daily motion decreased in infected animals by approximately 10% before the detection of the disease by clinical signs. These results show the promise of video processing techniques for real-time early detection of livestock infectious diseases.

29 November 2020 in Animals
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Journal Article
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EFE. Fernández-Carrión
E. Fernández-Carrión
JBJose A Barasona
Jose A Barasona
ASAngel Sanchez
Angel Sanchez
CJCristina Jurado
Cristina Jurado
ECEstefanía Cadenas-Fernández
Estefanía Cadenas-Fernández
JSJosé Manuel Sánchez-Vizcaíno
José Manuel Sánchez-Vizcaíno
Early detection of infectious diseases is the most cost-effective strategy in disease surveillance for reducing the risk of outbreaks. Latest deep learning and computer vision improvements are powerful tools that potentially open up a new field of research in epidemiology and disease control. These techniques were used here to develop an algorithm aimed to track and compute animal motion in real time. This algorithm was used in experimental trials in order to assess African swine fever (ASF) infection course in Eurasian wild boar. Overall, the outcomes showed negative correlation between motion reduction and fever caused by ASF infection. In addition, infected animals computed significant lower movements compared to uninfected animals. The obtained results suggest that a motion monitoring system based on artificial vision may be used in indoors to trigger suspicions of fever. It would help farmers and animal health services to detect early clinical signs compatible with infectious diseases. This technology shows a promising non-intrusive, economic and real time solution in the livestock industry with especial interest in ASF, considering the current concern in the world pig industry.


22 March 2018 in PLOS ONE
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Journal Article
Open access
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EFE. Fernández-Carrión
E. Fernández-Carrión
BIBenjamin Ivorra
Benjamin Ivorra
ÁRÁngel Manuel Ramos
Ángel Manuel Ramos
Beatriz Martínez-LópezBeatriz Martínez-López
Beatriz Martínez-López
CVCecilia Aguilar Vega
Cecilia Aguilar Vega
JSJosé Manuel Sánchez-Vizcaíno
José Manuel Sánchez-Vizcaíno
This work develops a methodology for estimating risk of wind-borne introduction of flying insects into a country, identifying areas and periods of high risk of vector-borne diseases incursion. This risk can be characterized by the role of suitable temperatures and wind currents in small insects’ survival and movements, respectively. The model predicts the number density of introduced insects over space and time based on three processes: the advection due to wind currents, the deposition on the ground and the survival due to climatic conditions. Spanish livestock has suffered many bluetongue outbreaks since 2004 and numerous experts point to Culicoides transported by wind from affected areas in North Africa as a possible cause. This work implements numerical experiments simulating the introduction of Culicoides in 2004. The model identified southern and eastern Spain, particularly between June and November, as being at greatest risk of wind-borne Culicoides introduction, which matches field data on bluetongue outbreaks in Spain this year. This validation suggests that this model may be useful for predicting introduction of airborne pathogens of significance to animal productivity.

13 October 2020 in Viruses
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Journal Article
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CVCecilia Aguilar Vega
Cecilia Aguilar Vega
JBJaime Bosch
Jaime Bosch
EFE. Fernández-Carrión
E. Fernández-Carrión
JLJavier Lucientes
Javier Lucientes
JSJosé Manuel Sánchez-Vizcaíno
José Manuel Sánchez-Vizcaíno
Bluetongue virus (BTV) causes a disease that is endemic in Spain and its two major biological vector species, C. imicola and the Obsoletus complex species, differ greatly in their ecology and distribution. Understanding the seasonality of BTV transmission in risk areas is key to improving surveillance and control programs, as well as to better understand the pathogen transmission networks between wildlife and livestock. Here, monthly risk transmission maps were generated using risk categories based on well-known BTV R0 equations and predicted abundances of the two most relevant vectors in Spain. Previously, Culicoides spp. predicted abundances in mainland Spain and the Balearic Islands were obtained using remote sensing data and random forest machine learning algorithm. Risk transmission maps were externally assessed with the estimated date of infection of BTV-1 and BTV-4 historical outbreaks. Our results highlight the differences in risk transmission during April-October, June-August being the period with higher R0 values. Likewise, a natural barrier has been identified between northern and central-southern areas at risk that may hamper BTV spread between them. Our results can be relevant to implement risk-based interventions for the prevention, control and surveillance of BTV and other diseases shared between livestock and wildlife host populations.