Dong Chu

Dr. Dong Chu

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 October 2019 in Ecology and Evolution
Verified
Journal Article
Open access
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WQWan‐Mei Qu
Wan‐Mei Qu
NLNi Liang
Ni Liang
ZWZi‐Ku Wu
Zi‐Ku Wu
YZYou‐Gang Zhao
You‐Gang Zhao
DCDong Chu
Dong Chu
Analysis of population genetics provides insights into the evolutionary processes, among which the sample size choice is per se a crucial issue in the analysis. Genome‐wide high‐throughput techniques based on RADseq have been increasingly used in studies on the population genomics of invasive species. However, there is little information available regarding optimal sample sizes for analyzing population genomics of invasive species. In this study, we first use type IIB endonucleases restriction site‐associated DNA (2b‐RAD) to mine thousands of single nucleotide polymorphisms (SNPs) for native and introduced populations in Q1 clade (SPB and 17JN) and Q2 clade (ISQ and UAS0601) of the whitefly, Bemisia tabaci (Gennadius) MED (also known as B. tabaci biotype Q). Then, we used resampling techniques to create simulated populations with a random subset of individuals and 3,000 SNPs to determine how many individuals should be sampled for accurate estimates of intra‐ and interpopulation genetic diversity. We calculated the intrapopulation genetic diversity parameters (unbiased expected heterozygosity, observed heterozygosity, and the number of effect alleles) and pairwise genetic differentiation FST; finally, an ad hoc statistic, ΔK, was used to determine the optimal value. Our results showed that a sample size greater than four individuals (n ≥ 4) has little impact on estimates of genetic diversity within whitefly populations; moreover, precise estimate of FST can be easily achieved at a very small simple size (n = 3 or 4). Our results will provide in‐depth understanding of the optimization of sampling schemes in population genomics of invasive species.

19 June 2014 in PLOS ONE
Verified
Journal Article
Open access
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YFYi-Wei Fang
Yi-Wei Fang
LLLing-Yun Liu
Ling-Yun Liu
HZHua-Li Zhang
Hua-Li Zhang
DJDe-Feng Jiang
De-Feng Jiang
DCDong Chu
Dong Chu
Our long-term field survey revealed that the Cardinium infection rate in Bemisia tabaci Q (also known as biotype Q) population was low in Shandong, China over the past few years. We hypothesize that (1) the Cardinium-infected (C+) B. tabaci Q population cannot efficiently compete with the Cardinium-uninfected (C−) B. tabaci Q population; (2) no reproductive isolation may have occurred between C+ and C−; and (3) the C− population has higher fitness than the C+ population. To reveal the differences in competitive ability and fitness between the two introduced populations (C+ and C−), competition between C+ and C− was examined over several generations. Subsequently, the reproductive isolation between C+ and C− was studied by crossing C+ with C− individuals, and the fitnesses of C+ and C− populations were compared using a two-sex life table method. Our results demonstrate that the competitive ability of the C+ whiteflies was weaker than that of C−. There is that no reproductive isolation occurred between the two populations and the C− population had higher fitness than the C+ population. The competitive ability and fitness differences of two populations may explain why C− whitefly populations have been dominant during the past few years in Shandong, China. However, the potential role Cardinium plays in whitefly should be further explored.

9 May 2020 in Insects
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Journal Article
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HLHongran Li
Hongran Li
WQWanmei Qu
Wanmei Qu
John J. ObryckiJohn J. Obrycki
John J. Obrycki
LMLing Meng
Ling Meng
Joe ZhouJoe Zhou
Joe Zhou
BLBaoping Li
Baoping Li
Finding optimal sample sizes is critical for the accurate estimation of genetic diversity of large invasive populations. Based on previous studies, we hypothesized that a minimal sample size of 3–8 individuals is sufficient to dissect the population architecture of the harlequin lady beetle, Harmonia axyridis, a biological control agent and an invasive alien species. Here, equipped with a type IIB endonuclease restriction site-associated (2b-RAD) DNA sequencing approach, we identified 13,766 and 13,929 single nucleotide polymorphisms (SNPs), respectively, among native and invasive H. axyridis populations. With this information we simulated populations using a randomly selected 3000 SNPs and a subset of individuals. From this simulation we finally determined that six individuals is the minimum sample size required for the accurate estimation of intra- and inter-population genetic diversity within and across H. axyridis populations. Our findings provide an empirical advantage for population genomic studies of H. axyridis in particular and suggest useful tactics for similar studies on multicellular organisms in general.

1 September 2018 in Pesticide Biochemistry and Physiology
Verified
Journal Article
Closed access
LGLei Guo
Lei Guo
MSMingming Su
Mingming Su
PLPei Liang
Pei Liang
SLShuo Li
Shuo Li
DCDong Chu
Dong Chu

13 February 2017 in Scientific Reports
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Journal Article
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XZXiao-Min Zheng
Xiao-Min Zheng
YTYun-Li Tao
Yun-Li Tao
HCHsin Chi
Hsin Chi
FWFang-Hao Wan
Fang-Hao Wan
DCDong Chu
Dong Chu
In this study, we evaluated the adaptability of the small brown planthopper (SBPH), Laodelphax striatellus (Hemiptera: Delphacidae) to four rice cultivars including Shengdao13 (SD13), Shengdao14 (SD14), Shengdao15 (SD15), and Zixiangnuo (ZXN) using the age-stage, two-sex life table with a simplified method for recording egg production (i.e., every five days vs. daily). The intrinsic rate of increase (r) of the SBPH was the highest (0.1067 d−1) on cultivar SD15, which was similar to the rate on SD14 (0.1029 d−1), but was significantly higher than that occurring on ZXN (0.0897 d−1) and SD13 (0.0802 d−1). The differences of the finite rate of increase (λ) on the four rice cultivars were consistent with the r values. Population projection predicted an explosive population growth of the SBPH occurring in a relatively short time when reared on SD14 and SD15. These findings demonstrated that the SBPH can successfully survive on the four rice cultivars, although there were varying host adaptabilities.

23 March 2016 in PLOS ONE
Verified
Journal Article
Open access
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MSMing-Ming Su
Ming-Ming Su
LGLei Guo
Lei Guo
YTYun-Li Tao
Yun-Li Tao
Youjun ZhangYoujun Zhang
Youjun Zhang
FWFang-Hao Wan
Fang-Hao Wan
DCDong Chu
Dong Chu
Although discrepancy in the specific traits and ecological characteristics of Bemisia tabaci between species are partially attributed to the B. tabaci-associated bacteria, the factors that affect the diversity of B. tabaci-associated bacteria are not well-understood. We used the metagenomic approach to characterize the B. tabaci-associated bacterial community because the approach is an effective tool to identify the bacteria. To investigate the effects of the host plant and a virus, tomato yellow leaf curl virus (TYLCV), on the bacterial communities of B. tabaci sibling species B and Q, we analyzed the bacterial communities associated with whitefly B and Q collected from healthy cotton, healthy tomato, and TYLCV-infected tomato. The analysis used miseq-based sequencing of a variable region of the bacterial 16S rDNA gene. For the bacteria associated with B. tabaci, we found that the influence of the host plant species was greater than that of the whitefly cryptic species. With further analysis of host plants infected with the TYLCV, the virus had no significant effects on the B. tabaci-associated bacterial community. The effects of different plant hosts and TYLCV-infection on the diversity of B. tabaci-associated bacterial communities were successfully analyzed in this study. To explain why B. tabaci sibling species with different host ranges differ in performance, the analysis of the bacterial community may be essential to the explanation.