Brian Halstead

Dr. Brian Halstead

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 June 2022 in Science
Verified
Journal Article
Closed access
BRBeth A. Reinke
Beth A. Reinke
HCHugo Cayuela
Hugo Cayuela
FJFredric J. Janzen
Fredric J. Janzen
JLJean-Francois Lemaitre
Jean-Francois Lemaitre
JGJean-Michel Gaillard
Jean-Michel Gaillard
DMDavid A. W. Miller
David A. W. Miller
Comparative studies of mortality in the wild are necessary to understand the evolution of aging; yet, ectothermic tetrapods are underrepresented in this comparative landscape, despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, using data from 107 populations (77 species) of nonavian reptiles and amphibians. We test hypotheses of how thermoregulatory mode, environmental temperature, protective phenotypes, and pace of life history contribute to demographic aging. Controlling for phylogeny and body size, ectotherms display a higher diversity of aging rates compared with endotherms and include phylogenetically widespread evidence of negligible aging. Protective phenotypes and life-history strategies further explain macroevolutionary patterns of aging. Analyzing ectothermic tetrapods in a comparative context enhances our understanding of the evolution of aging.

3 August 2020 in Scientific Reports
Verified
Journal Article
Open access
PDF file
JWJ. Hardin Waddle
J. Hardin Waddle
DGDaniel A. Grear
Daniel A. Grear
BMBrittany A. Mosher
Brittany A. Mosher
EGEvan H. Campbell Grant
Evan H. Campbell Grant
MAMichael J. Adams
Michael J. Adams
MWMegan E. Winzeler
Megan E. Winzeler
The salamander chytrid fungus (Batrachochytrium salamandrivorans [Bsal]) is causing massive mortality of salamanders in Europe. The potential for spread via international trade into North America and the high diversity of salamanders has catalyzed concern about Bsal in the U.S. Surveillance programs for invading pathogens must initially meet challenges that include low rates of occurrence on the landscape, low prevalence at a site, and imperfect detection of the diagnostic tests. We implemented a large-scale survey to determine if Bsal was present in North America designed to target taxa and localities where Bsal was determined highest risk to be present based on species susceptibility and geography. Our analysis included a Bayesian model to estimate the probability of occurrence of Bsal given our prior knowledge of the occurrence and prevalence of the pathogen. We failed to detect Bsal in any of 11,189 samples from 594 sites in 223 counties within 35 U.S. states and one site in Mexico. Our modeling indicates that Bsal is highly unlikely to occur within wild amphibians in the U.S. and suggests that the best proactive response is to continue mitigation efforts against the introduction and establishment of the disease and to develop plans to reduce impacts should Bsal establish.

20 October 2011 in Animal Conservation
Verified
Journal Article
Open access
PDF file
BHBrian Halstead
Brian Halstead
GWG. D. Wylie
G. D. Wylie
PCP. S. Coates
P. S. Coates
PVP. Valcarcel
P. Valcarcel
MCM. L. Casazza
M. L. Casazza
The estimation of survival is an essential but difficult task important for developing rigorous conservation programs. Radio telemetry studies of wildlife survival are often characterized by small sample sizes and high rates of censoring. In cases where multiple radio telemetry studies of a species exist, shared frailty models of survival offer the ability to combine data from multiple studies and improve the precision of survival estimates. We used Bayesian analysis of shared frailty models to examine survival of adult females of the giant gartersnake (Thamnophis gigas) in the Sacramento Valley, California, USA, and to examine the effects of individual and habitat characteristics on daily risk of mortality. Posterior mean annual survival probability of adult females was 0.61 [95% credible interval (CI) = 0.41–0.79]. The daily risk of mortality for adult female giant gartersnakes while in terrestrial habitats was 0.38 (0.09–0.89) times as great as when they inhabited aquatic habitats. Although 95% CIs for hazard ratios of other covariates included one, sites varied substantially in the effect of linear habitats, which appear to have context-dependent effects on survival. Assessing survival with shared frailty models allows the prediction of survival probabilities at novel sites and identifies regional and context-specific mortality risks that can be targeted for conservation action.

13 January 2021 in Journal of Virology
Verified
Journal Article
Closed access
PDF file
YLYanpeng Li
Yanpeng Li
Eda AltanEda Altan
Eda Altan
GRGabriel Reyes
Gabriel Reyes
BHBrian Halstead
Brian Halstead
XDXutao Deng
Xutao Deng
EDEric Delwart
Eric Delwart
Characterizing the bat virome is important for understanding viral diversity and detecting viral spillover between animal species. Using an unbiased metagenomics method, we characterize the virome in guano collected from multiple roosts of common Northern California bat species. We describe several novel viral genomes and report the detection of viruses with close relatives reported in other bat species, likely reflecting cross-species transmissions. Viral sequences from well-known carnivore and rodent parvoviruses were also detected, whose presence are likely the result of contamination from defecation and urination atop guano and which reflect the close interaction of these mammals in the wild.

17 December 2010 in Copeia
Verified
Journal Article
Closed access
BHBrian Halstead
Brian Halstead
GWGlenn D. Wylie
Glenn D. Wylie
MCMichael L. Casazza
Michael L. Casazza

19 July 2023 in Conservation Science and Practice
Verified
Journal Article
Open access
EGEvan H. Campbell Grant
Evan H. Campbell Grant
SAStaci M. Amburgey
Staci M. Amburgey
BGBrian Gratwicke
Brian Gratwicke
Víctor José Acosta-ChavesVíctor José Acosta-Chaves
Víctor José Acosta-Chaves
ABAnat M. Belasen
Anat M. Belasen
EMErin Muths
Erin Muths
The problem of global amphibian declines has prompted extensive research over the last three decades. Initially, the focus was on identifying and characterizing the extent of the problem, but more recently efforts have shifted to evidence‐based research designed to identify best solutions and to improve conservation outcomes. Despite extensive accumulation of knowledge on amphibian declines, there remain knowledge gaps and disconnects between science and action that hamper our ability to advance conservation efforts. Using input from participants at the ninth World Congress of Herpetology, a U.S. Geological Survey Powell Center symposium, amphibian on‐line forums for discussion, the International Union for Conservation of Nature Assisted Reproductive Technologies and Gamete Biobanking group, and respondents to a survey, we developed a list of 25 priority research questions for amphibian conservation at this stage of the Anthropocene. We identified amphibian conservation research priorities while accounting for expected tradeoffs in geographic scope, costs, and the taxonomic breadth of research needs. We aimed to solicit views from individuals rather than organizations while acknowledging inequities in participation. Emerging research priorities (i.e., those under‐represented in recently published amphibian conservation literature) were identified, and included the effects of climate change, community‐level (rather than single species‐level) drivers of declines, methodological improvements for research and monitoring, genomics, and effects of land‐use change. Improved inclusion of under‐represented members of the amphibian conservation community was also identified as a priority. These research needs represent critical knowledge gaps for amphibian conservation although filling these gaps may not be necessary for many conservation actions.