Khurram Bashir

Dr. Khurram Bashir

Plant Genomics Network Research Team, Center for Sustainable Resource Science, RIKEN, Yokohama Campus, Yokohama, Japan
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Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 February 2012 in Scientific Reports
Verified
Journal Article
Open access
YIYasuhiro Ishimaru
Yasuhiro Ishimaru
RTRyuichi Takahashi
Ryuichi Takahashi
KBKhurram Bashir
Khurram Bashir
HSHugo Shimo
Hugo Shimo
TSTakeshi Senoura
Takeshi Senoura
NNNaoko K. Nishizawa
Naoko K. Nishizawa
Metals like manganese (Mn) and iron (Fe) are essential for metabolism, while cadmium (Cd) is toxic for virtually all living organisms. Understanding the transport of these metals is important for breeding better crops. We have identified that OsNRAMP5 contributes to Mn, Fe and Cd transport in rice. OsNRAMP5 expression was restricted to roots epidermis, exodermis, and outer layers of the cortex as well as in tissues around the xylem. OsNRAMP5 localized to the plasma membrane, and complemented the growth of yeast strains defective in Mn, Fe, and Cd transport. OsNRAMP5 RNAi (OsNRAMP5i) plants accumulated less Mn in the roots, and less Mn and Fe in shoots, and xylem sap. The suppression of OsNRAMP5 promoted Cd translocation to shoots, highlighting the importance of this gene for Cd phytoremediation. These data reveal that OsNRAMP5 contributes to Mn, Cd, and Fe transport in rice and is important for plant growth and development.

1 February 2010 in The Plant Journal
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Journal Article
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YIYasuhiro Ishimaru
Yasuhiro Ishimaru
HMHiroshi Masuda
Hiroshi Masuda
KBKhurram Bashir
Khurram Bashir
HIHaruhiko Inoue
Haruhiko Inoue
TTTakashi Tsukamoto
Takashi Tsukamoto
NNNaoko K. Nishizawa
Naoko K. Nishizawa
Rice (Oryza sativa) is indispensable in the diet of most of the world’s population. Thus, it is an important target in which to alter iron (Fe) uptake and homeostasis, so as to increase Fe accumulation in the grain. We previously isolated OsYSL2, a functional iron [Fe(II)]- and manganese [Mn(II)]-nicotianamine complex transporter that is expressed in phloem cells and developing seeds. We produced RNAi (OsYSL2i) and overexpression lines (OXOsYSL2) of OsYSL2. At the vegetative stage in an OsYSL2i line, the Fe and Mn concentrations were decreased in the shoots, and the Fe concentration was increased in the roots. At the reproductive stage, positron-emitting tracer imaging system analysis revealed that Fe translocation to the shoots and seeds was suppressed in OsYSL2i. The Fe and Mn concentrations were decreased in the seeds of OsYSL2i, especially in the endosperm. Moreover, the Fe concentration in OXOsYSL2 was lower in the seeds and shoots, but higher in the roots, compared with the wild type. Furthermore, when OsYSL2 expression was driven by the sucrose transporter promoter, the Fe concentration in the polished rice was up to 4.4-fold higher compared with the wild type. These results indicate that the altered expression of OsYSL2 changes the localization of Fe, and that OsYSL2 is a critical Fe-nicotianamine transporter important for Fe translocation, especially in the shoots and endosperm.

1 October 2006 in Journal of Biological Chemistry
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Journal Article
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KBKhurram Bashir
Khurram Bashir
HIHaruhiko Inoue
Haruhiko Inoue
SNSeiji Nagasaka
Seiji Nagasaka
MTMichiko Takahashi
Michiko Takahashi
HNHiromi Nakanishi
Hiromi Nakanishi
NNNaoko K. Nishizawa
Naoko K. Nishizawa
Graminaceous plants have evolved a unique mechanism to acquire iron through the secretion of a family of small molecules, called mugineic acid family phytosiderophores (MAs). All MAs are synthesized from l-Met, sharing the same pathway from l-Met to 2′-deoxymugineic acid (DMA). DMA is synthesized through the reduction of a 3″-keto intermediate by deoxymugineic acid synthase (DMAS). We have isolated DMAS genes from rice (OsDMAS1), barley (HvDMAS1), wheat (TaD-MAS1), and maize (ZmDMAS1). Their nucleotide sequences indicate that OsDMAS1 encodes a predicted polypeptide of 318 amino acids, whereas the other three orthologs all encode predicted polypeptides of 314 amino acids and are highly homologous (82–97.5%) to each other. The DMAS proteins belong to the aldo-keto reductase superfamily 4 (AKR4) but do not fall within the existing subfamilies of AKR4 and appear to constitute a new subfamily within the AKR4 group. All of the proteins showed DMA synthesis activity in vitro. Their enzymatic activities were highest at pH 8–9, consistent with the hypothesis that DMA is synthesized in subcellular vesicles. Northern blot analysis revealed that the expression of each of the above DMAS genes is up-regulated under iron-deficient conditions in root tissue, and that of the genes OsDMAS1 and TaDMAS1 is up-regulated in shoot tissue. OsDMAS1 promoter-GUS analysis in iron-sufficient roots showed that its expression is restricted to cells participating in long distance transport and that it is highly up-regulated in the entire root under iron-deficient conditions. In shoot tissue, OsDMAS1 promoter drove expression in vascular bundles specifically under iron-deficient conditions.

26 June 2017 in Nature Plants
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Journal Article
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JKJong-Myong Kim
Jong-Myong Kim
TTTaiko Kim To
Taiko Kim To
AMAkihiro Matsui
Akihiro Matsui
KTKeitaro Tanoi
Keitaro Tanoi
NKNatsuko I. Kobayashi
Natsuko I. Kobayashi
MSMotoaki Seki
Motoaki Seki

1 December 2012 in Plant Signaling & Behavior
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Journal Article
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RTRyuichi Takahashi
Ryuichi Takahashi
KBKhurram Bashir
Khurram Bashir
YIYasuhiro Ishimaru
Yasuhiro Ishimaru
NNNaoko K. Nishizawa
Naoko K. Nishizawa
HNHiromi Nakanishi
Hiromi Nakanishi
The P1B-type heavy metal ATPases (HMAs) are diverse in terms of tissue distribution, subcellular localization, and metal specificity. Functional studies of HMAs have shown that these transporters can be divided into two subgroups based on their metal-substrate specificity: a copper (Cu)/silver (Ag) group and a zinc (Zn)/cobalt (Co)/cadmium (Cd)/lead (Pb) group. Studies on Arabidopsis thaliana and metal hyperaccumulator plants indicate that HMAs play an important role in the translocation or detoxification of Zn and Cd in plants. Rice possesses nine HMA genes, of which OsHMA1–OsHMA3 belong to the Zn/Co/Cd/Pb subgroup. OsHMA2 plays an important role in root-to-shoot translocation of Zn and Cd, and participates in Zn and Cd transport to developing seeds in rice. OsHMA3 transports Cd and plays a role in the sequestration of Cd into vacuoles in root cells. Modification of the expression of these genes might be an effective approach for reducing the Cd concentration in rice grains.

14 May 2019 in F1000Research
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Journal Article
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KBKhurram Bashir
Khurram Bashir
AMAkihiro Matsui
Akihiro Matsui
SRSultana Rasheed
Sultana Rasheed
MSMotoaki Seki
Motoaki Seki
Despite recent advancements in plant molecular biology and biotechnology, providing food security for an increasing world population remains a challenge. Drought (water scarcity), salinity, heat, and cold stress are considered major limiting factors that affect crop production both qualitatively and quantitatively. Therefore, the development of cost-effective and environmentally friendly strategies will be needed to resolve these agricultural problems. This will require a comprehensive understanding of transcriptomic alterations that occur in plants in response to varying levels of environmental stresses, singly and in combination. Here, we briefly discuss the current status and future challenges in plant research related to understanding transcriptional changes that occur in response to drought, salinity, heat, and cold stress.