Baris Uzilday

Dr. Baris Uzilday

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 May 2013 in Functional Plant Biology
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RORengin Ozgur
Rengin Ozgur
BUBaris Uzilday
Baris Uzilday
ASAskim Hediye Sekmen
Askim Hediye Sekmen
ITIsmail Turkan
Ismail Turkan
Production of reactive oxygen species (ROS), which are a by-product of normal cell metabolism in living organisms, is an inevitable consequence of aerobic life on Earth, and halophytes are no exception to this rule. The accumulation of ROS is elevated under different stress conditions, including salinity, due to a serious imbalance between their production and elimination. These ROS are highly toxic and, in the absence of protective mechanisms, can cause oxidative damage to lipids, proteins and DNA, leading to alterations in the redox state and further damage to the cell. Besides functioning as toxic by-products of stress metabolism, ROS are also important signal transduction molecules in controlling growth, development and responses to stress. Plants control the concentrations of ROS by an array of enzymatic and non-enzymatic antioxidants. Although a relation between enzymatic and non-enzymatic antioxidant defence mechanisms and tolerance to salt stress has been reported, little information is available on ROS-mediated signalling, perception and specificity in different halophytic species. Hence, in this review, we describe recent advances in ROS homeostasis and signalling in response to salt, and discuss current understanding of ROS involvement in stress sensing, stress signalling and regulation of acclimation responses in halophytes. We also highlight the role of genetic, proteomic and metabolic approaches for the successful study of the complex relationship among antioxidants and their functions in halophytes, which would be critical in increasing salt tolerance in crop plants.

20 February 2014 in Journal of Experimental Botany
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RORengin Ozgur
Rengin Ozgur
ITIsmail Turkan
Ismail Turkan
BUBaris Uzilday
Baris Uzilday
ASAskim H. Sekmen
Askim H. Sekmen
Inefficient chaperone activity in endoplasmic reticulum (ER) causes accumulation of unfolded proteins and is called ER stress, which triggers the unfolded protein response. For proper oxidative protein folding, reactive oxygen species (ROS) such as H2O2 are produced in the ER. Although the role of ROS during abiotic stresses such as salinity is well documented, the role of ER-related ROS production and its signalling is not yet known. Moreover, how H2O2 production, redox regulation, and antioxidant defence are affected in salt-treated plants when ER protein-folding machinery is impaired needs to be elucidated. For this aim, changes in NADPH-oxidase-dependent ROS signalling and H2O2 content at sequential time intervals and after 48h of ER stress, induced by tunicamycin (Tm), salinity, and their combination were determined in Arabidopsis thaliana. The main root growth was inhibited by ER stress, while low levels of Tm caused an increase in lateral root density. Salt stress and Tm induced the expression of ER-stress-related genes (bZIP17, bZIP28, bZIP60, TIN1, BiP1, BiP3) and ERO1. Tm induced expression of RBOHD and RBOHF, which led to an early increase in H2O2 and triggered ROS signalling. This study is the first report that ER stress induces the antioxidant system and the Asada–Halliwell pathway of A. thaliana in a similar way to salinity. ER stress caused oxidative damage, as evident by increased H2O2 accumulation, lipid peroxidation, and protein oxidation. As a result, this study shows that ER stress triggers ROS signalling, changes the redox state, and regulates the antioxidant defence of A. thaliana.

1 March 2014 in Environmental and Experimental Botany
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Journal Article
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ASAskim Hediye Sekmen
Askim Hediye Sekmen
RORengin Ozgur
Rengin Ozgur
BUBaris Uzilday
Baris Uzilday
ITIsmail Turkan
Ismail Turkan

1 January 2012 in Plant Science
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Journal Article
Open access
BUBaris Uzilday
Baris Uzilday
ITIsmail Turkan
Ismail Turkan
ASA.H. Sekmen
A.H. Sekmen
ROR. Ozgur
R. Ozgur
HKH.C. Karakaya
H.C. Karakaya
Differences between antioxidant responses to drought in C(3) and C(4) plants are rather scanty. Even, we are not aware of any research on comparative ROS formation and antioxidant enzymes in C(3) and C(4) species differing in carboxylation pathway of same genus which would be useful to prevent other differences in plant metabolism. With this aim, relative shoot growth rate, relative water content and osmotic potential, hydrogen peroxide (H(2)O(2)) content and NADPH oxidase (NOX) activity, antioxidant defence system (superoxide dismutase (SOD), catalase (CAT), peroxidase (POX), ascorbate peroxidase (APX), glutathione reductase (GR) enzymes and their isoenzymes), CAT1 mRNA level, and lipid peroxidation in seedlings of Cleome spinosa (C(3)) and Cleome gynandra (C(4)) species of Cleome genus exposed to drought stress for 5 and 10 day (d) were comparatively investigated. Constitutive levels of antioxidant enzymes (except SOD) were consistently higher in C. spinosa than in C. gynandra under control conditions. CAT1 gene expression in C. spinosa was correlated with CAT activity but CAT1 gene expression in C. gynandra at 10 d did not show this correlation. Drought stress caused an increase in POX, CAT, APX and GR in both species. However, SOD activity was slightly decreased in C. gynandra while it was remained unchanged or increased on 5 and 10 d of stress in C. spinosa, respectively. Parallel to results of malon dialdehyde (MDA), H(2)O(2) content was also remarkably increased in C. spinosa as compared to C. gynandra under drought stress. These results suggest that in C. spinosa, antioxidant defence system was insufficient to suppress the increasing ROS production under stress condition. On the other hand, in C. gynandra, although its induction was lower as compared to C. spinosa, antioxidant system was able to cope with ROS formation under drought stress.

1 September 2019 in Environmental and Experimental Botany
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Journal Article
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TYTolga Yalcinkaya
Tolga Yalcinkaya
BUBaris Uzilday
Baris Uzilday
RORengin Ozgur
Rengin Ozgur
ITIsmail Turkan
Ismail Turkan
JMJun’ichi Mano
Jun’ichi Mano

12 June 2015 in Annals of Botany
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Journal Article
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RORengin Ozgur
Rengin Ozgur
BUBaris Uzilday
Baris Uzilday
ASA. Hediye Sekmen
A. Hediye Sekmen
ITIsmail Turkan
Ismail Turkan
Background and Aims Accumulation of unfolded proteins caused by inefficient chaperone activity in the endoplasmic reticulum (ER) is termed ‘ER stress’, and it is perceived by a complex gene network. Induction of these genes triggers a response termed the ‘unfolded protein response’ (UPR). If a cell cannot overcome the accumulation of unfolded proteins, the ER-associated degradation (ERAD) system is induced to degrade those proteins. In addition to other factors, reactive oxygen species (ROS) are also produced during oxidative protein-folding in the ER. It has been shown in animal systems that there is a tight association between mitochondrial ROS and ER stress. However, in plants there are no reports concerning how induced ROS production in mitochondria and chloroplasts affects ER stress and if there is a possible role of organelle-originated ROS as a messenger molecule in the unfolded protein response. To address this issue, electron transport in chloroplasts and mitochondria and carnitine acetyl transferase (CAT) activity in peroxisomes were inhibited in wild-type Arabidopsis thaliana to induce ROS production. Expression of UPR genes was then investigated. Methods Plants of A. thaliana ecotype Col-0 were treated with various H2O2- and ROS-producing agents specific to different organelles, including the mitochondria, chloroplasts and peroxisomes. The expression of ER stress sensor/transducer genes (bZIP28, bZIP17, IRE1A, IRE1B, BiP1, BiP3), genes related to protein folding (CNX, ERO1) and ERAD genes (HRD1, SEL1, DER1, UBC32) were evaluated by qRT-PCR analysis. Key Results Relatively low concentrations of ROS were more effective for induction of the ER stress response. Mitochondrial and chloroplastic ROS production had different induction mechanisms for the UPR and ER stress responses. Conclusions Chloroplast- and mitochondria-originated ROS have distinct roles in triggering the ER stress response. In general, low concentrations of ROS induced the transcription of ER stress-related genes, which can be attributed to the roles of ROS as secondary messengers. This is the first time that ROS production in organelles has been shown to affect the ER stress response in a plant system.