Krzysztof Zienkiewicz

Krzysztof Zienkiewicz


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 August 2019 in Science
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Journal Article
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DRDmitrij Rekhter
Dmitrij Rekhter
DLDaniel Lüdke
Daniel Lüdke
YDYuli Ding
Yuli Ding
KFKirstin Feussner
Kirstin Feussner
KZKrzysztof Zienkiewicz
Krzysztof Zienkiewicz
IFIvo Feussner
Ivo Feussner
Spontaneous degradation in hormone synthesis: The phytohormone salicylic acid (SA) helps plants respond to biological and physical stresses. Rekhter et al. identified the biosynthetic pathway that produces SA in response to pathogens. A precursor, isochorismic acid, is formed in the chloroplast and then exported to the cytosol. There, enzymatically produced isochorismate-9-glutamate spontaneously decomposes to release SA plus a by-product. The results clarify key steps in the mechanisms involved in synthesizing this important regulator of plant immunity. Science , this issue p. 498

1 April 2018 in Progress in Lipid Research
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Journal Article
Open access
NZNodumo Nokulunga Zulu
Nodumo Nokulunga Zulu
KZKrzysztof Zienkiewicz
Krzysztof Zienkiewicz
KVKatharina Vollheyde
Katharina Vollheyde
IFIvo Feussner
Ivo Feussner
Diatoms are the most dominant phytoplankton species in oceans and they continue to receive a great deal of attention because of their significant contributions in ecosystems and the environment. Due to triacylglycerol (TAG) profiles that are abundant in medium-chain fatty acids, diatoms have emerged to be better feed stocks for biofuel production, in comparison to the commonly studied green microalgal species (chlorophytes). Importantly, diatoms are also known for their high levels of the essential ω3 fatty acids, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) and are considered to be a promising alternative source of these components. The two most commonly exploited diatoms include Thalassiosira pseudonana and Phaeodactylum tricornutum. Although obvious similarities between diatoms and chlorophytes exist, there are some substantial differences in their lipid metabolism. This review provides an overview on lipid metabolism in diatoms, with P. tricornutum as the most explored model. Special emphasis is placed on the synthesis and incorporation of very long chain ω3 fatty acids into lipids. Furthermore, current approaches including genetic engineering and biotechnological methods aimed at improving and maximizing lipid production in P. tricornutum are also discussed.

1 September 2016 in Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
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Journal Article
Closed access
KZKrzysztof Zienkiewicz
Krzysztof Zienkiewicz
Zhiyan DuZhiyan Du
Zhiyan Du
Wei MaWei Ma
Wei Ma
KVKatharina Vollheyde
Katharina Vollheyde
CBChristoph Benning
Christoph Benning

11 January 2017 in Environmental Microbiology
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Journal Article
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JUJ. Uehling
J. Uehling
AGAndrii P. Gryganskyi
Andrii P. Gryganskyi
KHK. Hameed
K. Hameed
TTT. Tschaplinski
T. Tschaplinski
Pawel MisztalPawel Misztal
Pawel Misztal
GBGregory Bonito
Gregory Bonito

13 July 2017 in Plant Biotechnology Journal
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EPEric Poliner
Eric Poliner
JPJane A. Pulman
Jane A. Pulman
KZKrzysztof Zienkiewicz
Krzysztof Zienkiewicz
KCKevin Childs
Kevin Childs
CBChristoph Benning
Christoph Benning
EFEva M. Farré
Eva M. Farré
Summary: Nannochloropsis oceanica is an oleaginous microalga rich in ω3 long‐chain polyunsaturated fatty acids (LC‐PUFAs) content, in the form of eicosapentaenoic acid (EPA). We identified the enzymes involved in LC‐PUFA biosynthesis in N. oceanica CCMP1779 and generated multigene expression vectors aiming at increasing LC‐PUFA content in vivo. We isolated the cDNAs encoding four fatty acid desaturases (FAD) and determined their function by heterologous expression in S. cerevisiae. To increase the expression of multiple fatty acid desaturases in N. oceanica CCMP1779, we developed a genetic engineering toolkit that includes an endogenous bidirectional promoter and optimized peptide bond skipping 2A peptides. The toolkit also includes multiple epitopes for tagged fusion protein production and two antibiotic resistance genes. We applied this toolkit, towards building a gene stacking system for N. oceanica that consists of two vector series, pNOC‐OX and pNOC‐stacked. These tools for genetic engineering were employed to test the effects of the overproduction of one, two or three desaturase‐encoding cDNAs in N. oceanica CCMP1779 and prove the feasibility of gene stacking in this genetically tractable oleaginous microalga. All FAD overexpressing lines had considerable increases in the proportion of LC‐PUFAs, with the overexpression of Δ12 and Δ5 FAD encoding sequences leading to an increase in the final ω3 product, EPA.

3 January 2017 in Biotechnology for Biofuels
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Journal Article
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KZKrzysztof Zienkiewicz
Krzysztof Zienkiewicz
AZAgnieszka Zienkiewicz
Agnieszka Zienkiewicz
EPEric Poliner
Eric Poliner
Zhiyan DuZhiyan Du
Zhiyan Du
KVKatharina Vollheyde
Katharina Vollheyde
CBChristoph Benning
Christoph Benning
Photosynthetic microalgae are considered a viable and sustainable resource for biofuel feedstocks, because they can produce higher biomass per land area than plants and can be grown on non-arable land. Among many microalgae considered for biofuel production, Nannochloropsis oceanica (CCMP1779) is particularly promising, because following nutrient deprivation it produces very high amounts of triacylglycerols (TAG). The committed step in TAG synthesis is catalyzed by acyl-CoA:diacylglycerol acyltransferase (DGAT). Remarkably, a total of 13 putative DGAT-encoding genes have been previously identified in CCMP1779 but most have not yet been studied in detail. Based on their expression profile, six out of 12 type-2 DGAT-encoding genes (NoDGTT1-NoDGTT6) were chosen for their possible role in TAG biosynthesis and the respective cDNAs were expressed in a TAG synthesis-deficient mutant of yeast. Yeast expressing NoDGTT5 accumulated TAG to the highest level. Over-expression of NoDGTT5 in CCMP1779 grown in N-replete medium resulted in levels of TAG normally observed only after N deprivation. Reduced growth rates accompanied NoDGTT5 over-expression in CCMP1779. Constitutive expression of NoDGTT5 in Arabidopsis thaliana was accompanied by increased TAG content in seeds and leaves. A broad substrate specificity for NoDGTT5 was revealed, with preference for unsaturated acyl groups. Furthermore, NoDGTT5 was able to successfully rescue the Arabidopsis tag1-1 mutant by restoring the TAG content in seeds. Taken together, our results identified NoDGTT5 as the most promising gene for the engineering of TAG synthesis in multiple hosts among the 13 DGAT-encoding genes of N. oceanica CCMP1779. Consequently, this study demonstrates the potential of NoDGTT5 as a tool for enhancing the energy density in biomass by increasing TAG content in transgenic crops used for biofuel production.