YIXUAN XIE

Dr. YIXUAN XIE

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 July 2020 in Nature Protocols
Verified
Journal Article
Closed access
PDF file
QLQiongyu Li
Qiongyu Li
YXYIXUAN XIE
YIXUAN XIE
MWMaurice Wong
Maurice Wong
MBMariana Barboza
Mariana Barboza
CLCarlito Lebrilla
Carlito Lebrilla

29 May 2024 in Nature Communications
Verified
Journal Article
Open access
PDF file
ZIZohreh Izadifar
Zohreh Izadifar
JCJustin Cotton
Justin Cotton
SCSiyu Chen
Siyu Chen
VHViktor Horvath
Viktor Horvath
ASAnna Stejskalova
Anna Stejskalova
DIDonald E Ingber
Donald E Ingber
Modulation of the cervix by steroid hormones and commensal microbiome play a central role in the health of the female reproductive tract. Here we describe organ-on-a-chip (Organ Chip) models that recreate the human cervical epithelial-stromal interface with a functional epithelial barrier and production of mucus with biochemical and hormone-responsive properties similar to living cervix. When Cervix Chips are populated with optimal healthy versus dysbiotic microbial communities (dominated by Lactobacillus crispatus and Gardnerella vaginalis, respectively), significant differences in tissue innate immune responses, barrier function, cell viability, proteome, and mucus composition are observed that are similar to those seen in vivo. Thus, human Cervix Organ Chips represent physiologically relevant in vitro models to study cervix physiology and host-microbiome interactions, and hence may be used as a preclinical testbed for development of therapeutic interventions to enhance women’s health.

4 December 2020 in Science
Verified
Journal Article
Closed access
DKDionna M. Kasper
Dionna M. Kasper
JHJared Hintzen
Jared Hintzen
YWYinyu Wu
Yinyu Wu
JGJoey J. Ghersi
Joey J. Ghersi
HMHanna K. Mandl
Hanna K. Mandl
SNStefania Nicoli
Stefania Nicoli
Sugar code regulates blood stem cells: During embryonic development, blood stem cells are derived from vascular endothelial cells that line the walls of developing arteries. The transition from endothelial cells to blood stem cells is highly regulated and restricted to a small portion of endothelial cells during a brief period of time. The mechanisms regulating this transition are also poorly understood. Kasper et al. found that microRNA-223 intrinsically restrains the vascular hematopoietic transition by regulating N-glycan biosynthesis to restrict hematopoietic stem and progenitor cell production and differentiation. Genetics or chemicals could be used to alter the sugar code and change the efficiency of blood production in embryos. Thus, genetically or pharmacologically altering N-glycan biosynthesis in endothelial cells could improve the efficiency of the production of blood stem cells, which could then be used to treat blood diseases such as leukemia. Science , this issue p. 1186

13 August 2019 in Cells
Verified
Journal Article
Open access
PDF file
QLQiongyu Li
Qiongyu Li
YXYIXUAN XIE
YIXUAN XIE
MWMaurice Wong
Maurice Wong
CLCarlito Lebrilla
Carlito Lebrilla
The cell membrane plays an important role in protecting the cell from its extracellular environment. As such, extensive work has been devoted to studying its structure and function. Crucial intercellular processes, such as signal transduction and immune protection, are mediated by cell surface glycosylation, which is comprised of large biomolecules, including glycoproteins and glycosphingolipids. Because perturbations in glycosylation could result in dysfunction of cells and are related to diseases, the analysis of surface glycosylation is critical for understanding pathogenic mechanisms and can further lead to biomarker discovery. Different mass spectrometry-based techniques have been developed for glycan analysis, ranging from highly specific, targeted approaches to more comprehensive profiling studies. In this review, we summarized the work conducted for extensive analysis of cell membrane glycosylation, particularly those employing liquid chromatography with mass spectrometry (LC-MS) in combination with various sample preparation techniques.

20 September 2023 in Nature
Verified
Journal Article
Closed access
PDF file
WLWilliam J. Lu-Culligan
William J. Lu-Culligan
LCLeah J. Connor
Leah J. Connor
YXYIXUAN XIE
YIXUAN XIE
BEBabatunde E. Ekundayo
Babatunde E. Ekundayo
BRBrendan T. Rose
Brendan T. Rose
MSMatthew D. Simon
Matthew D. Simon

17 August 2020 in Chemical Science
Verified
Journal Article
Open access
PDF file
YXYIXUAN XIE
YIXUAN XIE
YSYing Sheng
Ying Sheng
QLQiongyu Li
Qiongyu Li
SJSeunghye Ju
Seunghye Ju
JRJoe Reyes
Joe Reyes
CLCarlito Lebrilla
Carlito Lebrilla
The cell membrane is composed of a network of glycoconjugates including glycoproteins and glycolipids that presents a dense matrix of carbohydrates playing critical roles in many biological processes. Lectin-based technology has been widely used to characterize glycoconjugates in tissues and cell lines. However, their specificity toward their putative glycan ligand and sensitivity in situ have been technologically difficult to study. Additionally, because they recognize primarily glycans, the underlying glycoprotein targets are generally not known. In this study, we employed lectin proximity oxidative labeling (Lectin PROXL) to identify cell surface glycoproteins that contain glycans that are recognized by lectins. Commonly used lectins were modified with a probe to produce hydroxide radicals in the proximity of the labeled lectins. The underlying polypeptides of the glycoproteins recognized by the lectins are oxidized and identified by the standard proteomic workflow. As a result, approximately 70% of identified glycoproteins were oxidized in situ by all the lectin probes, while only 5% of the total proteins were oxidized. The correlation between the glycosites and oxidation sites demonstrated the effectiveness of the lectin probes. The specificity and sensitivity of each lectin were determined using site-specific glycan information obtained through glycomic and glycoproteomic analyses. Notably, the sialic acid-binding lectins and the fucose-binding lectins had higher specificity and sensitivity compared to other lectins, while those that were specific to high mannose glycans have poor sensitivity and specificity. This method offers an unprecedented view of the interactions of lectins with specific glycoproteins as well as protein networks that are mediated by specific glycan types on cell membranes.