Chih-Ching Wu

Prof. Chih-Ching Wu

orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 October 2012 in Journal of Proteome Research
Verified
Journal Article
Closed access
CCChien-Lun Chen
Chien-Lun Chen
YLYue-Fan Lai
Yue-Fan Lai
Petrus TangPetrus Tang
Petrus Tang
KCKun-Yi Chien
Kun-Yi Chien
JYJau-Song Yu
Jau-Song Yu
Yi-Ting ChenYi-Ting Chen
Yi-Ting Chen


1 June 2010 in Molecular & Cellular Proteomics
Verified
Journal Article
Open access
PDF file
CWChih-Ching Wu
Chih-Ching Wu
CHChia-Wei Hsu
Chia-Wei Hsu
CCChi-De Chen
Chi-De Chen
CYChia-Jung Yu
Chia-Jung Yu
KCKai-Ping Chang
Kai-Ping Chang
JYJau-Song Yu
Jau-Song Yu
Although cancer cell secretome profiling is a promising strategy used to identify potential body fluid-accessible cancer biomarkers, questions remain regarding the depth to which the cancer cell secretome can be mined and the efficiency with which researchers can select useful candidates from the growing list of identified proteins. Therefore, we analyzed the secretomes of 23 human cancer cell lines derived from 11 cancer types using one-dimensional SDS-PAGE and nano-LC-MS/MS performed on an LTQ-Orbitrap mass spectrometer to generate a more comprehensive cancer cell secretome. A total of 31,180 proteins was detected, accounting for 4,584 non-redundant proteins, with an average of 1,300 proteins identified per cell line. Using protein secretion-predictive algorithms, 55.8% of the proteins appeared to be released or shed from cells. The identified proteins were selected as potential marker candidates according to three strategies: (i) proteins apparently secreted by one cancer type but not by others (cancer type-specific marker candidates), (ii) proteins released by most cancer cell lines (pan-cancer marker candidates), and (iii) proteins putatively linked to cancer-relevant pathways. We then examined protein expression profiles in the Human Protein Atlas to identify biomarker candidates that were simultaneously detected in the secretomes and highly expressed in cancer tissues. This analysis yielded 6–137 marker candidates selective for each tumor type and 94 potential pan-cancer markers. Among these, we selectively validated monocyte differentiation antigen CD14 (for liver cancer), stromal cell-derived factor 1 (for lung cancer), and cathepsin L1 and interferon-induced 17-kDa protein (for nasopharyngeal carcinoma) as potential serological cancer markers. In summary, the proteins identified from the secretomes of 23 cancer cell lines and the Human Protein Atlas represent a focused reservoir of potential cancer biomarkers.

31 August 2010 in Journal of Proteome Research
Verified
Journal Article
Closed access
Yi-Ting ChenYi-Ting Chen
Yi-Ting Chen
CCChien-Lun Chen
Chien-Lun Chen
HCHsiao-Wei Chen
Hsiao-Wei Chen
TCTing Chung
Ting Chung
CWChih-Ching Wu
Chih-Ching Wu
JYJau-Song Yu
Jau-Song Yu


1 June 2012 in Journal of Proteomics
Verified
Journal Article
Closed access
Yi-Ting ChenYi-Ting Chen
Yi-Ting Chen
HCHsiao-Wei Chen
Hsiao-Wei Chen
DDDominik Domanski
Dominik Domanski
DSDerek S. Smith
Derek S. Smith
KLKung-Hao Liang
Kung-Hao Liang
JYJau-Song Yu
Jau-Song Yu