Seonah Kim

Seonah Kim

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 May 2020 in Nature Communications
Verified
Journal Article
Open access
PDF file
PJPeter C. St. John
Peter C. St. John
YGYanfei Guan
Yanfei Guan
YKYeonjoon Kim
Yeonjoon Kim
SKSeonah Kim
Seonah Kim
RPRobert S. Paton
Robert S. Paton
Bond dissociation enthalpies (BDEs) of organic molecules play a fundamental role in determining chemical reactivity and selectivity. However, BDE computations at sufficiently high levels of quantum mechanical theory require substantial computing resources. In this paper, we develop a machine learning model capable of accurately predicting BDEs for organic molecules in a fraction of a second. We perform automated density functional theory (DFT) calculations at the M06-2X/def2-TZVP level of theory for 42,577 small organic molecules, resulting in 290,664 BDEs. A graph neural network trained on a subset of these results achieves a mean absolute error of 0.58 kcal mol−1 (vs DFT) for BDEs of unseen molecules. We further demonstrate the model on two applications: first, we rapidly and accurately predict major sites of hydrogen abstraction in the metabolism of drug-like molecules, and second, we determine the dominant molecular fragmentation pathways during soot formation.

28 December 2017 in ACS Catalysis
Verified
Journal Article
Closed access
BKBrandon C. Knott
Brandon C. Knott
CNClaire T. Nimlos
Claire T. Nimlos
DRDavid J. Robichaud
David J. Robichaud
MNMark R. Nimlos
Mark R. Nimlos
SKSeonah Kim
Seonah Kim
RGRajamani Gounder
Rajamani Gounder

3 February 2021 in Accounts of Chemical Research
Verified
Journal Article
Closed access
LGLiliana C. Gallegos
Liliana C. Gallegos
GLGuilian Luchini
Guilian Luchini
PJPeter C. St. John
Peter C. St. John
SKSeonah Kim
Seonah Kim
RPRobert S. Paton
Robert S. Paton

21 July 2020 in Scientific Data
Verified
Journal Article
Open access
PDF file
PJPeter C. St. John
Peter C. St. John
YGYanfei Guan
Yanfei Guan
YKYeonjoon Kim
Yeonjoon Kim
BEBrian D. Etz
Brian D. Etz
SKSeonah Kim
Seonah Kim
RPRobert S. Paton
Robert S. Paton
The stabilities of radicals play a central role in determining the thermodynamics and kinetics of many reactions in organic chemistry. In this data descriptor, we provide consistent and validated quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules containing C, H, N and O atoms. These data consist of optimized 3D geometries, enthalpies, Gibbs free energy, vibrational frequencies, Mulliken charges and spin densities calculated at the M06-2X/def2-TZVP level of theory, which was previously found to have a favorable trade-off between experimental accuracy and computational efficiency. We expect this data to be useful in the further development of machine learning techniques to predict reaction pathways, bond strengths, and other phenomena closely related to organic radical chemistry.

6 December 2023 in Digital Discovery
Verified
Journal Article
Open access
PDF file
SBSeoin Back
Seoin Back
AAAlán Aspuru-Guzik
Alán Aspuru-Guzik
MCMichele Ceriotti
Michele Ceriotti
GGGanna Gryn'Ova
Ganna Gryn'Ova
BGBartosz A. Grzybowski
Bartosz A. Grzybowski
AWAron Walsh
Aron Walsh
The ASLLA Symposium focused on accelerating chemical science with AI. Discussions on data, new applications, algorithms, and education were summarized. Recommendations for researchers, educators, and academic bodies were provided.

30 November 2020 in ACS Catalysis
Verified
Journal Article
Closed access
YKYeonjoon Kim
Yeonjoon Kim
AMAshutosh Mittal
Ashutosh Mittal
DRDavid J. Robichaud
David J. Robichaud
HPHeidi M. Pilath
Heidi M. Pilath
BEBrian D. Etz
Brian D. Etz
SKSeonah Kim
Seonah Kim