francesco smedile

Dr. francesco smedile


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
14 June 2023 in Microbial Biotechnology
Verified
Journal Article
Open access
VCVioletta La Cono
Violetta La Cono
EMEnzo Messina
Enzo Messina
OROleg Reva
Oleg Reva
FSfrancesco smedile
francesco smedile
GSGina La Spada
Gina La Spada
Michail M. YakimovMichail M. Yakimov
Michail M. Yakimov
Climate change, desertification, salinisation of soils and the changing hydrology of the Earth are creating or modifying microbial habitats at all scales including the oceans, saline groundwaters and brine lakes. In environments that are saline or hypersaline, the biodegradation of recalcitrant plant and animal polysaccharides can be inhibited by salt‐induced microbial stress and/or by limitation of the metabolic capabilities of halophilic microbes. We recently demonstrated that the chitinolytic haloarchaeon Halomicrobium can serve as the host for an ectosymbiont, nanohaloarchaeon ‘ Candidatus Nanohalobium constans’. Here, we consider whether nanohaloarchaea can benefit from the haloarchaea‐mediated degradation of xylan, a major hemicellulose component of wood. Using samples of natural evaporitic brines and anthropogenic solar salterns, we describe genome‐inferred trophic relations in two extremely halophilic xylan‐degrading three‐member consortia. We succeeded in genome assembly and closure for all members of both xylan‐degrading cultures and elucidated the respective food chains within these consortia. We provide evidence that ectosymbiontic nanohaloarchaea is an active ecophysiological component of extremely halophilic xylan‐degrading communities (although by proxy ) in hypersaline environments. In each consortium, nanohaloarchaea occur as ectosymbionts of Haloferax , which in turn act as scavenger of oligosaccharides produced by xylan‐hydrolysing Halorhabdus . We further obtained and characterised the nanohaloarchaea–host associations using microscopy, multi‐omics and cultivation approaches. The current study also doubled culturable nanohaloarchaeal symbionts and demonstrated that these enigmatic nano‐sized archaea can be readily isolated in binary co‐cultures using an appropriate enrichment strategy. We discuss the implications of xylan degradation by halophiles in biotechnology and for the United Nation's Sustainable Development Goals.

29 May 2024 in Sustainability
Verified
Journal Article
Open access
PDF file
NPNunziatina Porcino
Nunziatina Porcino
FCFrancesca Crisafi
Francesca Crisafi
MCMaurizio Catalfamo
Maurizio Catalfamo
RDRenata Denaro
Renata Denaro
FSfrancesco smedile
francesco smedile
Daily industrial activities pose a significant risk of environmental contamination through the release of toxic chemicals, including heavy metals, radionuclides and organic pollutants. Coastal marine areas, estuaries and harbors serve as primary hotspots for such pollution, with marine sediments acting as the ultimate sink for industrial and urban discharges, posing a serious environmental problem. Addressing this pressing issue requires the adoption of environmentally friendly technologies for the remediation and recovery of contaminated marine sediments. This paper provides a comprehensive review of different approaches for the remediation of contaminated sediments, focusing on the principle of electrokinetic remediation, with special emphasis on the use of microorganisms. A bibliometric analysis of key articles in the field is presented to elucidate the most important findings, particularly in the marine environment. The current state-of-the-art is reported for soil and sediment remediation approaches, with the first large-scale experiments and a preliminary cost estimate reported. However, the limited information available on the applicability of these techniques in the marine environment is highlighted. The limitations and risks associated with an inadequate implementation of this technique are discussed while acknowledging the advantages it offers for in situ remediation in marine environments.

7 October 2019 in bioRxiv
Verified
Preprint
Open access
PDF file
VCVioletta La Cono
Violetta La Cono
EMEnzo Messina
Enzo Messina
MRManfred Rohde
Manfred Rohde
EAErika Arcadi
Erika Arcadi
SCSergio Ciordia
Sergio Ciordia
Michail M. YakimovMichail M. Yakimov
Michail M. Yakimov
Nanohaloarchaeota, a clade of diminutive archaea, with small genomes and limited metabolic capabilities, are ubiquitous in hypersaline habitats, which they share with the extremely halophilic and phylogenetically distant euryarchaea. Some of these nanohaloarchaeota and euryarchaea appear to interact with each other. In this study, we investigate the genetic and physiological nature of their relationship. We isolated the nanohaloarchaeon Candidatus Nanohalobium constans LC1Nh and the haloarchaeon Halomicrobium sp. LC1Hm from a solar saltern, reproducibly co-cultivated these species, sequenced their genomes, and characterized their metabolic/trophic interactions. The nanohaloarchaeon is a magnesium-dependent aerotolerant heterotrophic anaerobe of the DPANN superphylum; it lacks respiratory complexes and its energy production relies on fermentative metabolism of sugar derivatives, obtained by depolymerizing alpha-glucans or by acquiring the chitin monomer N-acetylglucosamine from the chitinolytic haloarchaeal host. Halomicrobium is a member of the class Halobacteria and a chitinotrophic aerobe. The nanohaloarchaeon lacks key biosynthetic pathways and is likely to be provided with amino acids, lipids, nucleotides and cofactors via physical contact with its host Halomicrobium . In turn, the ability of Ca . Nanohalobium to hydrolyse alpha-glucans boosts the host’s growth in the absence of a chitin substrate. These findings suggest that at least some members of the nanohaloarchaea, previously considered ecologically unimportant given their limited metabolic potential, in fact may play significant roles in the microbial carbon turnover, food chains, and ecosystem function. The behaviour of Halomicrobium , which accommodates the colonization by Ca . Nanohalobium, can be interpreted as a bet-hedging strategy, maximizing its long-term fitness in a habitat where the availability of carbon substrates can vary both spatially and temporarily.

15 March 2022 in Microorganisms
Verified
Journal Article
Open access
PDF file
VCVioletta La Cono
Violetta La Cono
FSfrancesco smedile
francesco smedile
FCFrancesca Crisafi
Francesca Crisafi
LMLaura Marturano
Laura Marturano
Stepan ToshchakovStepan Toshchakov
Stepan Toshchakov
Michail M. YakimovMichail M. Yakimov
Michail M. Yakimov
Antarctic sea-ice is exposed to a wide range of environmental conditions during its annual existence; however, there is very little information describing the change in sea-ice-associated microbial communities (SIMCOs) during the changing seasons. It is well known that during the solar seasons, SIMCOs play an important role in the polar carbon-cycle, by increasing the total photosynthetic primary production of the South Ocean and participating in the remineralization of phosphates and nitrogen. What remains poorly understood is the dynamic of SIMCO populations and their ecological contribution to carbon and nutrient cycling throughout the entire annual life of Antarctic sea-ice, especially in winter. Sea ice at this time of the year is an extreme environment, characterized by complete darkness (which stops photosynthesis), extremely low temperatures in its upper horizons (down to −45 °C) and high salinity (up to 150–250 psu) in its brine inclusions, where SIMCOs thrive. Without a permanent station, wintering expeditions in Antarctica are technically difficult; therefore, in this study, the process of autumn freezing was modelled under laboratory conditions, and the resulting ‘young ice’ was further incubated in cold and darkness for one month. The ice formation experiment was primarily designed to reproduce two critical conditions: (i) total darkness, causing the photosynthesis to cease, and (ii) the presence of a large amount of algae-derived organic matter. As expected, in the absence of photosynthesis, the activity of aerobic heterotrophs quickly created micro-oxic conditions, which caused the emergence of new players, namely facultative anaerobic and anaerobic microorganisms. Following this finding, we can state that Antarctic pack-ice and its surrounding ambient (under-ice seawater and platelet ice) are likely to be very dynamic and can quickly respond to environmental changes caused by the seasonal fluctuations. Given the size of Antarctic pack-ice, even in complete darkness and cessation of photosynthesis, its ecosystem appears to remain active, continuing to participate in global carbon-and-sulfur cycling under harsh conditions.

28 August 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
VCVioletta La Cono
Violetta La Cono
GSGina La Spada
Gina La Spada
FSfrancesco smedile
francesco smedile
FCFrancesca Crisafi
Francesca Crisafi
LMLaura Marturano
Laura Marturano
Michail M. YakimovMichail M. Yakimov
Michail M. Yakimov
The artificial solar saltwork fields of Hon Khoi are important industrial and biodiversity resources in southern Vietnam. Most hypersaline environments in this area are characterized by saturated salinity, nearly neutral pH, intense ultraviolet radiation, elevated temperatures and fast desiccation processes. However, the extreme halophilic prokaryotic communities associated with these stressful environments remain uninvestigated. To fill this gap, a metabarcoding approach was conducted to characterize these communities by comparing them with solar salterns in northern Vietnam as well as with Italian salterns. Sequencing analyses revealed that the multiple reuses of crystallization ponds apparently create significant perturbations and structural instability in prokaryotic consortia. However, some interesting features were noticed when we examined the diversity of ultra-small prokaryotes belonging to Patescibacteria and DPANN Archaea. Surprisingly, we found at least five deeply branched clades, two from Patescibacteria and three from DPANN Archaea, which seem to be quite specific to Hon Khoi saltwork fields ecosystem and can be considered as a part of biogeographical connotation. Further studies are needed to characterize these uncultivated taxa, to isolate and cultivate them, which will allow us to elucidate their ecological role in these hypersaline habitats and to explore their biotechnological and biomedical potential.

1 January 2020 in Indian Journal of Anaesthesia
Verified
Journal Article
Open access
PDF file
FSfrancesco smedile
francesco smedile
GGGiovanni Giordano
Giovanni Giordano
MPMariangela Padua
Mariangela Padua
RPRosanna Pariante
Rosanna Pariante
Indian Journal of Anaesthesia, Official publication of Indian Society of Anaesthesiologists