Basabi Chakraborty

Dr. Basabi Chakraborty

Professor, Faculty of Software and Information Science, Iwate Prefectural University, Iwate 020-0693, Japan

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
28 December 2020 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Weilun WangWeilun Wang
Weilun Wang
Goutam ChakrabortyGoutam Chakraborty
Goutam Chakraborty
BCBasabi Chakraborty
Basabi Chakraborty
Background: Creatinine is a type of metabolite of blood that is strongly correlated to glomerular filtration rate (GFR). As measuring GFR is difficult, creatinine value is used for indirectly determining GFR and then the stage of chronic kidney disease (CKD). Adding a creatinine test into routine health examination could detect CKD. As more items for comprehensive examination means higher cost, creatinine testing is not included in the routine health examination in many countries. An algorithm based on common test results, without creatinine test, to evaluate the risk of CKD will increase the chance of its early detection and treatment. Methods: In this study, we used open source data containing 1 million samples. These data contain 23 health-related features, including common diagnostic test results provided by National Health Insurance Sharing Service (NHISS). A low GFR indicates possible chronic kidney disease (CKD). As is commonly accepted in the medical community, a GFR of 60 mL/min is used as the threshold, below which is considered to have CKD. In this study, the first step aims to build a regression model to predict the value of creatinine from 23 features, and then combine the predicted value of creatinine with the original 23 features to evaluate the risk of CKD. We will show by simulation that by the proposed method we can achieve better prediction results compared to direct prediction from 23 features. The data is extremely unbalanced for predicting the target variable creatinine. We used undersampling method and proposed a new cost-sensitive mean-squared error (MSE) loss function to deal with the problem. Regrading model selection, this work used three machine learning models: a bagging tree model named Random Forest, a boosting tree model named XGBoost, and a neural network based model named ResNet. To improve the result of the creatinine predictor, we averaged results from eight predictors, a method known as ensemble learning. Finally, the predicted creatinine and the original 23 features is used to predict the risk of CKD. Results: We optimized results of R-Squared (R2) value to select the appropriate undersampling strategy and the regression model for the regression stage of creatinine prediction. Ensembled model achieved the best performance of R2 of 0.5590. The six factors from 23 are selected from the top of the list of how strongly they affect the creatinine value. They are sex, age, hemoglobin, the level of urine protein, waist circumference, and habit of smoking. Using the predicted value of creatinine, an area under Receiver Operating Characteristic curve (AUC) of 0.76 is achieved while classifying samples for CKD. Conclusions: Using commonly available health parameters, the proposed system can assess the risk of CKD for public health. High-risk subjects can be screened and advised to take a creatinine test for further confirmation. In this way, we can reduce the impact of CKD on public health and facilitate early detection for many, where a blanket test of creatinine is not available for all.

23 January 2022 in Sensors
Verified
Journal Article
Open access
PDF file
RMRiki Murakami
Riki Murakami
BCBasabi Chakraborty
Basabi Chakraborty
With the rapid proliferation of social networking sites (SNS), automatic topic extraction from various text messages posted on SNS are becoming an important source of information for understanding current social trends or needs. Latent Dirichlet Allocation (LDA), a probabilistic generative model, is one of the popular topic models in the area of Natural Language Processing (NLP) and has been widely used in information retrieval, topic extraction, and document analysis. Unlike long texts from formal documents, messages on SNS are generally short. Traditional topic models such as LDA or pLSA (probabilistic latent semantic analysis) suffer performance degradation for short-text analysis due to a lack of word co-occurrence information in each short text. To cope with this problem, various techniques are evolving for interpretable topic modeling for short texts, pretrained word embedding with an external corpus combined with topic models is one of them. Due to recent developments of deep neural networks (DNN) and deep generative models, neural-topic models (NTM) are emerging to achieve flexibility and high performance in topic modeling. However, there are very few research works on neural-topic models with pretrained word embedding for generating high-quality topics from short texts. In this work, in addition to pretrained word embedding, a fine-tuning stage with an original corpus is proposed for training neural-topic models in order to generate semantically coherent, corpus-specific topics. An extensive study with eight neural-topic models has been completed to check the effectiveness of additional fine-tuning and pretrained word embedding in generating interpretable topics by simulation experiments with several benchmark datasets. The extracted topics are evaluated by different metrics of topic coherence and topic diversity. We have also studied the performance of the models in classification and clustering tasks. Our study concludes that though auxiliary word embedding with a large external corpus improves the topic coherency of short texts, an additional fine-tuning stage is needed for generating more corpus-specific topics from short-text data.

17 November 2024 in Knowledge and Information Systems
Verified
Journal Article
Closed access
PDF file
AMAshis Kumar Mandal
Ashis Kumar Mandal
BCBasabi Chakraborty
Basabi Chakraborty

Verified
Journal Article
Open access
PDF file
KNKotaro Nakano
Kotaro Nakano
BCBasabi Chakraborty
Basabi Chakraborty
Time series classification (TSC) is becoming very important in the area of pattern recognition with the increased availability of time series data in various natural and real life phenomena. TSC is a challenging problem because, due to the attributes being ordered, traditional machine learning algorithms for static data are not quite suitable for processing temporal data. Due to the gradual increase of computing power, a large number of TSC algorithms have been developed recently. In addition to traditional feature-based, model-based or distance-based algorithms, ensemble and deep networks have recently become popular for time series classification. Time series are essentially huge, and classifying raw data is computationally expensive in terms of both processing and storage. Representation techniques for data reduction and ease of visualization are needed for accurate classification. In this work a recurrence plot-based data representation is proposed and time series classification in conjunction with a deep neural network-based classifier has been studied. A simulation experiment with 85 benchmark data sets from UCR repository has been undertaken with several state of the art algorithms for time series classification in addition to our proposed scheme of classification for comparative study. It was found that, among non-ensemble algorithms, the proposed algorithm produces the highest classification accuracy for most of the data sets.

23 August 2021 in Symmetry
Verified
Journal Article
Open access
PDF file
AMAshis Kumar Mandal
Ashis Kumar Mandal
RSRikta Sen
Rikta Sen
SGSaptarsi Goswami
Saptarsi Goswami
BCBasabi Chakraborty
Basabi Chakraborty
Accurate global horizontal irradiance (GHI) forecasting is crucial for efficient management and forecasting of the output power of photovoltaic power plants. However, developing a reliable GHI forecasting model is challenging because GHI varies over time, and its variation is affected by changes in weather patterns. Recently, the long short-term memory (LSTM) deep learning network has become a powerful tool for modeling complex time series problems. This work aims to develop and compare univariate and several multivariate LSTM models that can predict GHI in Guntur, India on a very short-term basis. To build the multivariate time series models, we considered all possible combinations of temperature, humidity, and wind direction variables along with GHI as inputs and developed seven multivariate models, while in the univariate model, we considered only GHI variability. We collected the meteorological data for Guntur from 1 January 2016 to 31 December 2016 and built 12 datasets, each containing variability of GHI, temperature, humidity, and wind direction of a month. We then constructed the models, each of which measures up to 2 h ahead of forecasting of GHI. Finally, to measure the symmetry among the models, we evaluated the performances of the prediction models using root mean square error (RMSE) and mean absolute error (MAE). The results indicate that, compared to the univariate method, each multivariate LSTM performs better in the very short-term GHI prediction task. Moreover, among the multivariate LSTM models, the model that incorporates the temperature variable with GHI as input has outweighed others, achieving average RMSE values 0.74 W/m2–1.5 W/m2.

17 November 2017 in Pattern Analysis and Applications
Verified
Journal Article
Closed access
PDF file
SGSaptarsi Goswami
Saptarsi Goswami
ADAmit Kumar Das
Amit Kumar Das
PGPriyanka Guha
Priyanka Guha
ATArunabha Tarafdar
Arunabha Tarafdar
SCSanjay Chakraborty
Sanjay Chakraborty
BCBasabi Chakraborty
Basabi Chakraborty