Bradley Baker

Dr. Bradley Baker


Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 May 2007 in PLOS ONE
Verified
Journal Article
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DDDimitar Dimitrov
Dimitar Dimitrov
YHYou He
You He
HMHiroki Mutoh
Hiroki Mutoh
BBBradley Baker
Bradley Baker
LCLawrence Cohen
Lawrence Cohen
TKThomas Knöpfel
Thomas Knöpfel
Fluorescent proteins have been used to generate a variety of biosensors to optically monitor biological phenomena in living cells. Among this class of genetically encoded biosensors, reporters for membrane potential have been a particular challenge. The use of presently known voltage sensor proteins is limited by incorrect subcellular localization and small or absent voltage responses in mammalian cells. Here we report on a fluorescent protein voltage sensor with superior targeting to the mammalian plasma membrane and high responsiveness to membrane potential signaling in excitable cells. This biosensor, which we termed VSFP2.1, is likely to lead to new methods of monitoring electrically active cells with cell type specificity, non-invasively and in large numbers, simultaneously.

1 March 2007 in Journal of Neuroscience Methods
Verified
Journal Article
Closed access
BBBradley Baker
Bradley Baker
HLH. Lee
H. Lee
VPV.A. Pieribone
V.A. Pieribone
LCL.B. Cohen
L.B. Cohen
EIE.Y. Isacoff
E.Y. Isacoff
EKE.K. Kosmidis
E.K. Kosmidis

1 April 2005 in Cellular and Molecular Neurobiology
Verified
Journal Article
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BBBradley Baker
Bradley Baker
EKEfstratios K. Kosmidis
Efstratios K. Kosmidis
DVDejan Vucinic
Dejan Vucinic
CFChun X. Falk
Chun X. Falk
LCLawrence B. Cohen
Lawrence B. Cohen
DZDejan Zecevic
Dejan Zecevic

7 January 2015 in Journal of Neuroscience
Verified
Journal Article
Open access
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Hong Hua PiaoHong Hua Piao
Hong Hua Piao
DRDhanarajan Rajakumar
Dhanarajan Rajakumar
BKBok Eum Kang
Bok Eum Kang
EKEun Ha Kim
Eun Ha Kim
BBBradley Baker
Bradley Baker
ArcLight is a genetically encoded fluorescent voltage sensor using the voltage-sensing domain of the voltage-sensing phosphatase fromCiona intestinalisthat gives a large but slow-responding optical signal in response to changes in membrane potential (Jin et al., 2012). Fluorescent voltage sensors using the voltage-sensing domain from other species give faster yet weaker optical signals (Baker et al., 2012; Han et al., 2013). Sequence alignment of voltage-sensing phosphatases from different species revealed conserved polar and charged residues at 7 aa intervals in the S1–S3 transmembrane segments of the voltage-sensing domain, suggesting potential coil–coil interactions. The contribution of these residues to the voltage-induced optical signal was tested using a cassette mutagenesis screen by flanking each transmembrane segment with unique restriction sites to allow for the testing of individual mutations in each transmembrane segment, as well as combinations in all four transmembrane segments. Addition of a counter charge in S2 improved the kinetics of the optical response. A double mutation in the S4 domain dramatically reduced the slow component of the optical signal seen in ArcLight. Combining that double S4 mutant with the mutation in the S2 domain yielded a probe with kinetics <10 ms. Optimization of the linker sequence between S4 and the fluorescent protein resulted in a new ArcLight-derived probe, Bongwoori, capable of resolving action potentials in a hippocampal neuron firing at 60 Hz. Additional manipulation of the voltage-sensing domain could potentially lead to fluorescent sensors capable of optically resolving neuronal inhibition and subthreshold synaptic activity.

27 November 2013 in PLOS ONE
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Journal Article
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PDF file
ZHZhou Han
Zhou Han
LJLei Jin
Lei Jin
JPJelena Platisa
Jelena Platisa
LCLawrence B. Cohen
Lawrence B. Cohen
BBBradley Baker
Bradley Baker
VPVincent A. Pieribone
Vincent A. Pieribone
We previously reported the discovery of a fluorescent protein voltage probe, ArcLight, and its derivatives that exhibit large changes in fluorescence intensity in response to changes of plasma membrane voltage. ArcLight allows the reliable detection of single action potentials and sub-threshold activities in individual neurons and dendrites. The response kinetics of ArcLight (τ1-on ~10 ms, τ2-on ~ 50 ms) are comparable with most published genetically-encoded voltage probes. However, probes using voltage-sensing domains other than that from the Ciona intestinalis voltage sensitive phosphatase exhibit faster kinetics. Here we report new versions of ArcLight, in which the Ciona voltage-sensing domain was replaced with those from chicken, zebrafish, frog, mouse or human. We found that the chicken and zebrafish-based ArcLight exhibit faster kinetics, with a time constant (τ) less than 6ms for a 100 mV depolarization. Although the response amplitude of these two probes (8-9%) is not as large as the Ciona-based ArcLight (~35%), they are better at reporting action potentials from cultured neurons at higher frequency. In contrast, probes based on frog, mouse and human voltage sensing domains were either slower than the Ciona-based ArcLight or had very small signals.

1 May 1995 in Immunogenetics
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Journal Article
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ADAndrew W. Dangel
Andrew W. Dangel
BBBradley Baker
Bradley Baker
AMAnna R. Mendoza
Anna R. Mendoza
CYChack-Yung Yu
Chack-Yung Yu