Yixin Shen

Dr. Yixin Shen


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 July 2019 in BMC Plant Biology
Verified
Journal Article
Open access
PDF file
JZJinglong Zhang
Jinglong Zhang
FJFangfang Jiang
Fangfang Jiang
YSYixin Shen
Yixin Shen
QZQiuwen Zhan
Qiuwen Zhan
BBBinqiang Bai
Binqiang Bai
YCYingjun Chi
Yingjun Chi
Phosphorus (P) deficiency in soil is a worldwide issue and a major constraint on the production of sorghum, which is an important staple food, forage and energy crop. The depletion of P reserves and the increasing price of P fertilizer make fertilizer application impractical, especially in developing countries. Therefore, identifying sorghum accessions with low-P tolerance and understanding the underlying molecular basis for this tolerance will facilitate the breeding of P-efficient plants, thereby resolving the P crisis in sorghum farming. However, knowledge in these areas is very limited. The 29 sorghum accessions used in this study demonstrated great variability in their tolerance to low-P stress. The internal P content in the shoot was correlated with P tolerance. A low-P-tolerant accession and a low-P-sensitive accession were chosen for RNA-seq analysis to identify potential underlying molecular mechanisms. A total of 2089 candidate genes related to P starvation tolerance were revealed and found to be enriched in 11 pathways. Gene Ontology (GO) enrichment analyses showed that the candidate genes were associated with oxidoreductase activity. In addition, further study showed that malate affected the length of the primary root and the number of tips in sorghum suffering from low-P stress. Our results show that acquisition of P from soil contributes to low-P tolerance in different sorghum accessions; however, the underlying molecular mechanism is complicated. Plant hormone (including auxin, ethylene, jasmonic acid, salicylic acid and abscisic acid) signal transduction related genes and many transcriptional factors were found to be involved in low-P tolerance in sorghum. The identified accessions will be useful for breeding new sorghum varieties with enhanced P starvation tolerance.

25 May 2020 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
SWShumin Wang
Shumin Wang
TGTao Guo
Tao Guo
ZWZhen Wang
Zhen Wang
JKJunmei Kang
Junmei Kang
QYQingchuan Yang
Qingchuan Yang
Ruicai LongRuicai Long
Ruicai Long
Related to ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1(VP1)(RAV) transcription factors, which encode a B3 domain and an APETALA2(AP2) domain, belong to the APETALA2/ethylene-responsive element binding factor(AP2/ERF) or B3 superfamily and play an important role in regulating plant growth and development and responding to abiotic stress. Although there have been many functional studies on RAV, the functional differences between RAVs are not clear. Therefore, in this study, the functional differences of RAVs of Medicago truncatula were analyzed. Based on sequence data from the plant transcription factor database and the M. truncatula genome database, we cloned three RAV genes from M. truncatula, named MtRAV1, MtRAV2, and MtRAV3. The cis-acting elements of these genes promoters were predicted, and the expression patterns of MtRAVs under exogenous conditions (4°C, NaCl, Polyethylene Glycol, Abscisic acid) were analyzed. MtRAVs transgenic Arabidopsis thaliana were obtained and subjected to adversity treatment. Subcellular localization results indicated that MtRAVs were located in the nucleus. A much lower expression level was observed for MtRAV3 than the levels of MtRAV1 and MtRAV2 in M. truncatula for growth in normal conditions, but under 4°C or PEG and NaCl treatment, the expression level of MtRAV3 was significantly increased. Only the MtRAV3 overexpression transgenic plants showed strong cold resistance, but the overexpressed MtRAV1 and MtRAV2 transgenic plants showed no difference from wild type plants. MtRAV transgenic plants exhibited similar response to exogenous mannitol, NaCl, and ABA, and the expression of some adverse-related marker genes were up-regulated, such as COLD REGULATED 414 THYLAKOID MEMBRANE 1 (COR414-TM1), Arabidopsis thaliana drought-induced 21 (AtDI21), and Arabidopsis thaliana phosphatidylinositol-specific phospholipase C (ATPLC). MtRAVs transgenic Arabidopsis thaliana exhibited increasing of branch number. These results indicated that there was some function redundancy during MtRAVs proteins of M. truncatula, and MtRAV3 has increased function compared to the other two genes. The results of this study should provide the foundation for future application of MtRAVs in legumes.

24 March 2016 in PLOS ONE
Verified
Journal Article
Open access
PDF file
JYJiajun Yan
Jiajun Yan
JZJianbo Zhang
Jianbo Zhang
KSKaiyan Sun
Kaiyan Sun
DCDan Chang
Dan Chang
SBShiqie Bai
Shiqie Bai
YDYanhai Dong
Yanhai Dong
Erianthus arundinaceus is not only an important germplasm resource for sugarcane breeding but also a potential bioenergy plant. Making clear the distribution of the chromosome ploidy of wild E. arundinaceus in china is the premise of the research and utilization of this species. Therefore, the objectives of this study were to determine the ploidy level and DNA content of the 55 E. arundinaceus accessions using flow cytometry and to identify the correlation between ploidy and phenotypic traits. Among the 55 accessions, four tetraploids and 51 hexaploids were identified. The four tetraploids originated from Mengma Yunnan, Shuangjiang Yunnan, Gaozhou Guangdong and Chengle Sichuan. The mean DNA content was 4.82 pg/2C for the tetraploid and 7.30 pg/2C for the hexaploid plants. The ploidy was negatively correlated with cellulose content and positively correlated (P<0.05) with plant height, stem diameter, leaf width, dry weight per plant, fresh weight per plant and hemicellulose content. However, ploidy was not correlated with leaf length, tiller number and the ratio of dry weight and fresh weight. This study will be useful for revealing the distribution of the ploidy of wild E. arundinaceus in Chin, traits markers analysis, and utilization of this species, such as cultivar improvement and sugarcane breeding in the future.

10 April 2020 in Journal of Soil Science and Plant Nutrition
Verified
Journal Article
Closed access
PDF file
LGLimin Gao
Limin Gao
JSJing Su
Jing Su
QTQian Tian
Qian Tian
YSYixin Shen
Yixin Shen

24 April 2019 in Acta Physiologiae Plantarum
Verified
Journal Article
Closed access
PDF file
BBBinqiang Bai
Binqiang Bai
ZWZi Wang
Zi Wang
LGLimin Gao
Limin Gao
WCWei Chen
Wei Chen
YSYixin Shen
Yixin Shen

1 November 2015 in Journal of the American Society for Horticultural Science
Verified
Journal Article
Closed access
PDF file
NLNanqing Liu
Nanqing Liu
YSYixin Shen
Yixin Shen
Bingru  HuangBingru Huang
Bingru Huang
Compatible solute accumulation regulating osmotic adjustment (OA) is associated with drought tolerance. The objectives of this study were to examine genetic variations in OA among a diverse group of bentgrass ( Agrostis sp.) genotypes or lines with differential drought tolerance, and determine major types of organic osmoregulants contributing to OA and accounting for the genetic variations in drought tolerance. A wild type cultivar of creeping bentgrass [ Agrostis stolonifera (Penncross)], a transgenic line of creeping bentgrass (SAGIPT41), and four hybrid bentgrass lines [ Agrostis capillaris × Agrostis stolonifera (ColxCr14, ColxCr190, ColxCr481, and ColxCr679)] were exposed to drought stress by withholding irrigation for 17 days in growth chambers. Among genotypes, ColxCr14, ColxCr190, and SAGIPT41 showed superior drought tolerance, as manifested by higher turf quality (TQ) and leaf relative water content (RWC), as well as OA than ‘Penncross’, ColxCr679, and ColxCr481 under drought stress. SAGIPT41 leaves accumulated greater content of soluble sugars (glucose, sucrose, and fructose), proline, glycine betaine (GB), and spermine; ColxCr190 had higher content of soluble sugars and spermidine; and ColxCr14 accumulated more soluble sugars and GB, compared with the three drought-sensitive genotypes. Soluble sugars were predominant contributors to OA, followed by GB and proline, with all three forms of polyamine (PA) as minor contributors in bentgrass genotypes. The osmolytes highly correlated to OA and superior drought tolerance could be used as biomarkers to select for drought-tolerant germplasm of bentgrass and other cool-season turfgrass species.