Jason Hopkins

Dr. Jason Hopkins


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 September 2017 in Global Change Biology
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SHStephanie A. Henson
Stephanie A. Henson
HCHarriet S. Cole
Harriet S. Cole
JHJason Hopkins
Jason Hopkins
AMAdrian P. Martin
Adrian P. Martin
AYAndrew Yool
Andrew Yool
The timing of the annual phytoplankton spring bloom is likely to be altered in response to climate change. Quantifying that response has, however, been limited by the typically coarse temporal resolution (monthly) of global climate models. Here, we use higher resolution model output (maximum 5 days) to investigate how phytoplankton bloom timing changes in response to projected 21st century climate change, and how the temporal resolution of data influences the detection of long‐term trends. We find that bloom timing generally shifts later at mid‐latitudes and earlier at high and low latitudes by ~5 days per decade to 2100. The spatial patterns of bloom timing are similar in both low (monthly) and high (5 day) resolution data, although initiation dates are later at low resolution. The magnitude of the trends in bloom timing from 2006 to 2100 is very similar at high and low resolution, with the result that the number of years of data needed to detect a trend in phytoplankton phenology is relatively insensitive to data temporal resolution. We also investigate the influence of spatial scales on bloom timing and find that trends are generally more rapidly detectable after spatial averaging of data. Our results suggest that, if pinpointing the start date of the spring bloom is the priority, the highest possible temporal resolution data should be used. However, if the priority is detecting long‐term trends in bloom timing, data at a temporal resolution of 20 days are likely to be sufficient. Furthermore, our results suggest that data sources which allow for spatial averaging will promote more rapid trend detection.

23 January 2015 in Global Biogeochemical Cycles
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JHJason Hopkins
Jason Hopkins
SHStephanie A. Henson
Stephanie A. Henson
SPStuart C. Painter
Stuart C. Painter
TTToby Tyrrell
Toby Tyrrell
APAlex J. Poulton
Alex J. Poulton
Coccolithophores are recognized as having a significant influence on the global carbon cycle through the production and export of calcium carbonate (often referred to as particulate inorganic carbon or PIC). Using remotely sensed PIC and chlorophyll data, we investigate the seasonal dynamics of coccolithophores relative to a mixed phytoplankton community. Seasonal variability in PIC, here considered to indicate changes in coccolithophore biomass, is identified across much of the global ocean. Blooms, which typically start in February–March in the low‐latitude (~30°) Northern Hemisphere and last for ~6–7 months, get progressively later (April–May) and shorter (3–4 months) moving poleward. A similar pattern is observed in the Southern Hemisphere, where blooms that generally begin around August–September in the lower latitudes and which last for ~8 months get later and shorter with increasing latitude. It has previously been considered that phytoplankton blooms consist of a sequential succession of blooms of individual phytoplankton types. Comparison of PIC and chlorophyll peak dates suggests instead that in many open ocean regions, blooms of coccolithophores and other phytoplankton can co‐occur, conflicting with the traditional view of species succession that is thought to take place in temperate regions such as the North Atlantic.

3 February 2013 in Nature Geoscience
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Journal Article
Closed access
SGSamantha J. Gibbs
Samantha J. Gibbs
APAlex J. Poulton
Alex J. Poulton
PBPaul R. Bown
Paul R. Bown
CDChris J. Daniels
Chris J. Daniels
JHJason Hopkins
Jason Hopkins
CNCherry Newsam
Cherry Newsam

24 June 2013 in New Phytologist
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BMBoyd A. McKew
Boyd A. McKew
PDPhillip Davey
Phillip Davey
SFStewart J. Finch
Stewart J. Finch
JHJason Hopkins
Jason Hopkins
SLStephane C. Lefebvre
Stephane C. Lefebvre
RGRichard J. Geider
Richard J. Geider
Summary: Mechanistic understanding of the costs and benefits of photoacclimation requires knowledge of how photophysiology is affected by changes in the molecular structure of the chloroplast. We tested the hypothesis that changes in the light dependencies of photosynthesis, nonphotochemical quenching and PSII photoinactivation arises from changes in the abundances of chloroplast proteins in Emiliania huxleyi strain CCMP 1516 grown at 30 (Low Light; LL) and 1000 (High Light; HL) μmol photons m−2 s−1 photon flux densities. Carbon‐specific light‐saturated gross photosynthesis rates were not significantly different between cells acclimated to LL and HL. Acclimation to LL benefited cells by increasing biomass‐specific light absorption and gross photosynthesis rates under low light, whereas acclimation to HL benefited cells by reducing the rate of photoinactivation of PSII under high light. Differences in the relative abundances of proteins assigned to light‐harvesting (Lhcf), photoprotection (LI818‐like), and the photosystem II (PSII) core complex accompanied differences in photophysiology: specifically, Lhcf:PSII was greater under LL, whereas LI818:PSII was greater in HL. Thus, photoacclimation in E. huxleyi involved a trade‐off amongst the characteristics of light absorption and photoprotection, which could be attributed to changes in the abundance and composition of proteins in the light‐harvesting antenna of PSII.

7 November 2017 in Biogeosciences
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HSHelen E. K. Smith
Helen E. K. Smith
APAlex J. Poulton
Alex J. Poulton
RGRebecca Garley
Rebecca Garley
JHJason Hopkins
Jason Hopkins
LLLaura C. Lubelczyk
Laura C. Lubelczyk
WBWilliam M. Balch
William M. Balch
The Great Calcite Belt (GCB) of the Southern Ocean is a region of elevated summertime upper ocean calcite concentration derived from coccolithophores, despite the region being known for its diatom predominance. The overlap of two major phytoplankton groups, coccolithophores and diatoms, in the dynamic frontal systems characteristic of this region provides an ideal setting to study environmental influences on the distribution of different species within these taxonomic groups. Samples for phytoplankton enumeration were collected from the upper mixed layer (30 m) during two cruises, the first to the South Atlantic sector (January–February 2011; 60° W–15° E and 36–60° S) and the second in the South Indian sector (February–March 2012; 40–120° E and 36–60° S). The species composition of coccolithophores and diatoms was examined using scanning electron microscopy at 27 stations across the Subtropical, Polar, and Subantarctic fronts. The influence of environmental parameters, such as sea surface temperature (SST), salinity, carbonate chemistry (pH, partial pressure of CO2 (pCO2), alkalinity, dissolved inorganic carbon), macronutrients (nitrate + nitrite, phosphate, silicic acid, ammonia), and mixed layer average irradiance, on species composition across the GCB was assessed statistically. Nanophytoplankton (cells 2–20 µm) were the numerically abundant size group of biomineralizing phytoplankton across the GCB, with the coccolithophore Emiliania huxleyi and diatoms Fragilariopsis nana, F. pseudonana, and Pseudo-nitzschia spp. as the most numerically dominant and widely distributed. A combination of SST, macronutrient concentrations, and pCO2 provided the best statistical descriptors of the biogeographic variability in biomineralizing species composition between stations. Emiliania huxleyi occurred in silicic acid-depleted waters between the Subantarctic Front and the Polar Front, a favorable environment for this species after spring diatom blooms remove silicic acid. Multivariate statistics identified a combination of carbonate chemistry and macronutrients, covarying with temperature, as the dominant drivers of biomineralizing nanoplankton in the GCB sector of the Southern Ocean.

16 October 2018 in Earth System Science Data
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Journal Article
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CDChris J. Daniels
Chris J. Daniels
APAlex J. Poulton
Alex J. Poulton
WBWilliam M. Balch
William M. Balch
Emilio MaranonEmilio Maranon
Emilio Maranon
TATim Adey
Tim Adey
TTToby Tyrrell
Toby Tyrrell
The biological production of calcium carbonate (CaCO3), a process termed calcification, is a key term in the marine carbon cycle. A major planktonic group responsible for such pelagic CaCO3 production (CP) is the coccolithophores, single-celled haptophytes that inhabit the euphotic zone of the ocean. Satellite-based estimates of areal CP are limited to surface waters and open-ocean areas, with current algorithms utilising the unique optical properties of the cosmopolitan bloom-forming species Emiliania huxleyi, whereas little understanding of deep-water ecology, optical properties or environmental responses by species other than E. huxleyi is currently available to parameterise algorithms or models. To aid future areal estimations and validate future modelling efforts we have constructed a database of 2765 CP measurements, the majority of which were measured using 12 to 24 h incorporation of radioactive carbon (14C) into acid-labile inorganic carbon (CaCO3). We present data collated from over 30 studies covering the period from 1991 to 2015, sampling the Atlantic, Pacific, Indian, Arctic and Southern oceans. Globally, CP in surface waters ( < 20 m) ranged from 0.01 to 8398 µmol C m−3 d−1 (with a geometric mean of 16.1 µmol C m−3 d−1). An integral value for the upper euphotic zone (herein surface to the depth of 1 % surface irradiance) ranged from < 0.1 to 6 mmol C m−2 d−1 (geometric mean 1.19 mmol C m−2 d−1). The full database is available for download from PANGAEA at https://doi.org/10.1594/PANGAEA.888182.