Ricardo Amils

Dr. Ricardo Amils

Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain
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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 September 2014 in Life
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Ricardo AmilsRicardo Amils
Ricardo Amils
DFDavid C Fernández-Remolar
David C Fernández-Remolar
TTThe IPBSL Team
The IPBSL Team
The geomicrobiological characterization of the water column and sediments of Río Tinto (Huelva, Southwestern Spain) have proven the importance of the iron and the sulfur cycles, not only in generating the extreme conditions of the habitat (low pH, high concentration of toxic heavy metals), but also in maintaining the high level of microbial diversity detected in the basin. It has been proven that the extreme acidic conditions of Río Tinto basin are not the product of 5000 years of mining activity in the area, but the consequence of an active underground bioreactor that obtains its energy from the massive sulfidic minerals existing in the Iberian Pyrite Belt. Two drilling projects, MARTE (Mars Astrobiology Research and Technology Experiment) (2003–2006) and IPBSL (Iberian Pyrite Belt Subsurface Life Detection) (2011–2015), were developed and carried out to provide evidence of subsurface microbial activity and the potential resources that support these activities. The reduced substrates and the oxidants that drive the system appear to come from the rock matrix. These resources need only groundwater to launch diverse microbial metabolisms. The similarities between the vast sulfate and iron oxide deposits on Mars and the main sulfide bioleaching products found in the Tinto basin have given Río Tinto the status of a geochemical and mineralogical Mars terrestrial analogue.

28 January 2013 in Environmental Microbiology
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MOM. Oggerin
M. Oggerin
FTF. Tornos
F. Tornos
NRN. Rodríguez
N. Rodríguez
CMC. del Moral
C. del Moral
MSMonica Sanchez-Roman
Monica Sanchez-Roman
Ricardo AmilsRicardo Amils
Ricardo Amils
Summary: R ío T into ( H uelva, southwestern S pain) is an extreme environment with a remarkably constant acidic pH and a high concentration of heavy metals, conditions generated by the metabolic activity of chemolithotrophic microorganisms thriving in the rich complex sulfides of the I berian P yrite B elt ( IPB ). Fungal strains isolated from the T into basin were characterized morphologically and phylogenetically. The strain identified as P urpureocillium lilacinum specifically induced the formation of a yellow‐ocher precipitate, identified as hydronium‐jarosite, an iron sulfate mineral which appears in abundance on the banks of Río Tinto. The biomineral was characterized by X ‐ray diffraction ( XRD ) and its formation was observed with high‐resolution transmission electron microscopy ( TEM ) and scanning electron microscopy ( SEM ) coupled to energy‐dispersive X ‐ray spectroscopy ( EDX ) microanalysis. Jarosite began to nucleate on the fungal cell wall, associated to the EPS , due to a local increase in the Fe 3+ / Fe 2+ ratio which generated supersaturation. Its formation has been also observed in non‐viable cells, although with much less efficiency. The occurrence of P . lilacinum in an ecosystem with high concentrations of ferric iron and sulfates such as R ío T into suggests that it could participate in the process of jarosite precipitation, helping to shape and control the geochemical properties of this environment.

24 January 2018 in Scientific Reports
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CECristina Escudero
Cristina Escudero
MVMario Vera
Mario Vera
MOMonike Oggerin
Monike Oggerin
Ricardo AmilsRicardo Amils
Ricardo Amils
Deep continental subsurface is defined as oligotrophic environments where microorganisms present a very low metabolic rate. To date, due to the energetic cost of production and maintenance of biofilms, their existence has not been considered in poor porous subsurface rocks. We applied fluorescence in situ hybridization techniques and confocal laser scanning microscopy in samples from a continental deep drilling project to analyze the prokaryotic diversity and distribution and the possible existence of biofilms. Our results show the existence of natural microbial biofilms at all checked depths of the Iberian Pyrite Belt (IPB) subsurface and the co-occurrence of bacteria and archaea in this environment. This observation suggests that multi-species biofilms may be a common and widespread lifestyle in subsurface environments.

22 September 2015 in Frontiers in Microbiology
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MSMonica Sanchez-Roman
Monica Sanchez-Roman
FPFernando Puente-Sanchez
Fernando Puente-Sanchez
VPVíctor Parro
Víctor Parro
Ricardo AmilsRicardo Amils
Ricardo Amils
Although phosphate and carbonate are important constituents in ancient and modern environments, it is not yet clear their biogeochemical relationships and their mechanisms of formation. Microbially mediated carbonate formation has been widely studied whereas little is known about the formation of phosphate minerals. Here we report that a new bacterial strain, Tessarococcus lapidicaptus, isolated from the subsurface of Rio Tinto basin (Huelva, SW Spain), is capable of precipitating Fe-rich phosphate and carbonate minerals. We observed morphological differences between phosphate and carbonate, which may help us to recognize these minerals in terrestrial and extraterrestrial environments. Finally, considering the scarcity and the unequal distribution and preservation patterns of phosphate and carbonates, respectively, in the geological record and the biomineralization process that produces those minerals, we propose a hypothesis for the lack of Fe-phosphates in natural environments and ancient rocks.

9 December 2022 in Environmental Microbiology
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Ricardo AmilsRicardo Amils
Ricardo Amils
CECristina Escudero
Cristina Escudero
MOMonike Oggerin
Monike Oggerin
FSFernando Puente Sánchez
Fernando Puente Sánchez
ARAlejandro Arce Rodríguez
Alejandro Arce Rodríguez
VPVictor Parro
Victor Parro
Microbial activity is a major contributor to the biogeochemical cycles that make up the life support system of planet Earth. A 613 m deep geomicrobiological perforation and a systematic multi‐analytical characterization revealed an unexpected diversity associated with the rock matrix microbiome that operates in the subsurface of the Iberian Pyrite Belt (IPB). Members of 1 class and 16 genera were deemed the most representative microorganisms of the IPB deep subsurface and selected for a deeper analysis. The use of fluorescence in situ hybridization allowed not only the identification of microorganisms but also the detection of novel activities in the subsurface such as anaerobic ammonium oxidation (ANAMMOX) and anaerobic methane oxidation, the co‐occurrence of microorganisms able to maintain complementary metabolic activities and the existence of biofilms. The use of enrichment cultures sensed the presence of five different complementary metabolic activities along the length of the borehole and isolated 29 bacterial species. Genomic analysis of nine isolates identified the genes involved in the complete operation of the light‐independent coupled C, H, N, S and Fe biogeochemical cycles. This study revealed the importance of nitrate reduction microorganisms in the oxidation of iron in the anoxic conditions existing in the subsurface of the IPB.

30 May 2018 in International Microbiology
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CECristina Escudero
Cristina Escudero
MOMónica Oggerin
Mónica Oggerin
Ricardo AmilsRicardo Amils
Ricardo Amils