Nagihan Bostanci

Prof. Nagihan Bostanci


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 December 2019 in Journal of Clinical Periodontology
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Journal Article
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NDNikolaos Donos
Nikolaos Donos
ECElena Calciolari
Elena Calciolari
NBNele Brusselaers
Nele Brusselaers
Matteo GoldoniMatteo Goldoni
Matteo Goldoni
Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
Georgios BelibasakisGeorgios Belibasakis
Georgios Belibasakis

6 November 2019 in Pathogens
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Journal Article
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Georgios BelibasakisGeorgios Belibasakis
Georgios Belibasakis
TMTerhi Maula
Terhi Maula
KBKai Bao
Kai Bao
MLMark Lindholm
Mark Lindholm
Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
Anders JohanssonAnders Johansson
Anders Johansson
Aggregatibacter actinomycetemcomitans is a periodontal pathogen colonizing the oral cavity of a large proportion of the human population. It is equipped with several potent virulence factors that can cause cell death and induce or evade inflammation. Because of the large genetic diversity within the species, both harmless and highly virulent genotypes of the bacterium have emerged. The oral condition and age, as well as the geographic origin of the individual, influence the risk to be colonized by a virulent genotype of the bacterium. In the present review, the virulence and pathogenicity properties of A. actinomycetemcomitans will be addressed.

1 July 2018 in Molecular & Cellular Proteomics
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Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
NSNathalie Selevsek
Nathalie Selevsek
WWWitold Wolski
Witold Wolski
JGJonas Grossmann
Jonas Grossmann
KBKai Bao
Kai Bao
Georgios BelibasakisGeorgios Belibasakis
Georgios Belibasakis
Periodontal diseases are among the most prevalent worldwide, but largely silent, chronic diseases. They affect the tooth-supporting tissues with multiple ramifications on life quality. Their early diagnosis is still challenging, due to lack of appropriate molecular diagnostic methods. Saliva offers a non-invasively collectable reservoir of clinically relevant biomarkers, which, if utilized efficiently, could facilitate early diagnosis and monitoring of ongoing disease. Despite several novel protein markers being recently enlisted by discovery proteomics, their routine diagnostic application is hampered by the lack of validation platforms that allow for rapid, accurate and simultaneous quantification of multiple proteins in large cohorts. Here we carried out a pipeline of two proteomic platforms; firstly, we applied open ended label-free quantitative (LFQ) proteomics for discovery in saliva (n = 67, including individuals with health, gingivitis, and periodontitis), followed by selected-reaction monitoring (SRM)-targeted proteomics for validation in an independent cohort (n = 82). The LFQ platform led to the discovery of 119 proteins with at least 2-fold significant difference between health and disease. The 65 proteins chosen for the subsequent SRM platform included 50 functionally related proteins derived from the significantly enriched processes of the LFQ data, 11 from literature-mining, and four house-keeping ones. Among those, 60 were reproducibly quantifiable proteins (92% success rate), represented by a total of 143 peptides. Machine-learning modeling led to a narrowed-down panel of five proteins of high predictive value for periodontal diseases with maximum area under the receiver operating curve >0.97 (higher in disease: Matrix metalloproteinase-9, Ras-related protein-1, Actin-related protein 2/3 complex subunit 5; lower in disease: Clusterin, Deleted in Malignant Brain Tumors 1). This panel enriches the pool of credible clinical biomarker candidates for diagnostic assay development. Yet, the quantum leap brought into the field of periodontal diagnostics by this study is the application of the biomarker discovery-through-verification pipeline, which can be used for validation in further cohorts.

19 March 2021 in Scientific Reports
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Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
KMKonstantinos Mitsakakis
Konstantinos Mitsakakis
BABeral Afacan
Beral Afacan
KBKai Bao
Kai Bao
BJBenita Johannsen
Benita Johannsen
MKMichal Karpíšek
Michal Karpíšek
Oral health is important not only due to the diseases emerging in the oral cavity but also due to the direct relation to systemic health. Thus, early and accurate characterization of the oral health status is of utmost importance. There are several salivary biomarkers as candidates for gingivitis and periodontitis, which are major oral health threats, affecting the gums. These need to be verified and validated for their potential use as differentiators of health, gingivitis and periodontitis status, before they are translated to chair-side for diagnostics and personalized monitoring. We aimed to measure 10 candidates using high sensitivity ELISAs in a well-controlled cohort of 127 individuals from three groups: periodontitis (60), gingivitis (31) and healthy (36). The statistical approaches included univariate statistical tests, receiver operating characteristic curves (ROC) with the corresponding Area Under the Curve (AUC) and Classification and Regression Tree (CART) analysis. The main outcomes were that the combination of multiple biomarker assays, rather than the use of single ones, can offer a predictive accuracy of > 90% for gingivitis versus health groups; and 100% for periodontitis versus health and periodontitis versus gingivitis groups. Furthermore, ratios of biomarkers MMP-8, MMP-9 and TIMP-1 were also proven to be powerful differentiating values compared to the single biomarkers.

16 February 2017 in Proteomics
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Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
KBKai Bao
Kai Bao

Verified
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Pune N PaquéPune N Paqué
Pune N Paqué
CHChristopher Herz
Christopher Herz
DWDaniel B Wiedemeier
Daniel B Wiedemeier
KMKonstantinos Mitsakakis
Konstantinos Mitsakakis
TAThomas Attin
Thomas Attin
Nagihan BostanciNagihan Bostanci
Nagihan Bostanci
This study investigated the potential of salivary bacterial and protein markers for evaluating the disease status in healthy individuals or patients with gingivitis or caries. Saliva samples from caries- and gingivitis-free individuals (n = 18), patients with gingivitis (n = 17), or patients with deep caries lesions (n = 38) were collected and analyzed for 44 candidate biomarkers (cytokines, chemokines, growth factors, matrix metalloproteinases, a metallopeptidase inhibitor, proteolytic enzymes, and selected oral bacteria). The resulting data were subjected to principal component analysis and used as a training set for random forest (RF) modeling. This computational analysis revealed four biomarkers (IL-4, IL-13, IL-2-RA, and eotaxin/CCL11) to be of high importance for the correct depiction of caries in 37 of 38 patients. The RF model was then used to classify 10 subjects (five caries-/gingivitis-free and five with caries), who were followed over a period of six months. The results were compared to the clinical assessments of dental specialists, revealing a high correlation between the RF prediction and the clinical classification. Due to the superior sensitivity of the RF model, there was a divergence in the prediction of two caries and four caries-/gingivitis-free subjects. These findings suggest IL-4, IL-13, IL-2-RA, and eotaxin/CCL11 as potential salivary biomarkers for identifying noninvasive caries. Furthermore, we suggest a potential association between JAK/STAT signaling and dental caries onset and progression.